RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 RASA3Q14644 834 aa12.06□□□□□ -0.48
UPF1-213ENST00000601981 ADGRA1Q86SQ6 560 aa12.06□□□□□ -0.48
UPF1-213ENST00000601981 ZSCAN29Q8IWY8 852 aaPredicted RBP12.06□□□□□ -0.48
UPF1-213ENST00000601981 AMOTL1Q8IY63 956 aa12.06□□□□□ -0.48
UPF1-213ENST00000601981 SH3RF3Q8TEJ3 882 aaPredicted RBP12.06□□□□□ -0.48
UPF1-213ENST00000601981 FAM151AQ8WW52 585 aa12.06□□□□□ -0.48
UPF1-213ENST00000601981 CDCA5Q96FF9 252 aa12.06□□□□□ -0.48
UPF1-213ENST00000601981 ESYT1Q9BSJ8 1104 aa12.06□□□□□ -0.48
UPF1-213ENST00000601981 PAPPA2Q9BXP8 1791 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 EPB41L2O43491 1005 aaKnown RBP12.05□□□□□ -0.48
UPF1-213ENST00000601981 MBD4O95243 580 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 ITGBL1O95965 494 aaPredicted RBP12.05□□□□□ -0.48
UPF1-213ENST00000601981 DYNLL1P63167 89 aaKnown RBP12.05□□□□□ -0.48
UPF1-213ENST00000601981 BECN1Q14457 450 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 RUFY2Q8WXA3 655 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 KLRG1Q96E93 195 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 RIOK1Q9BRS2 568 aaKnown RBP12.05□□□□□ -0.48
UPF1-213ENST00000601981 ZNF408Q9H9D4 720 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 HELLSQ9NRZ9 838 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 COL2A1P02458 1487 aaPredicted RBP12.05□□□□□ -0.48
UPF1-213ENST00000601981 PASKQ96RG2 1323 aa12.05□□□□□ -0.48
UPF1-213ENST00000601981 TRAF5O00463 557 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 PPP1R12BO60237 982 aaPredicted RBP12.04□□□□□ -0.48
UPF1-213ENST00000601981 WDHD1O75717 1129 aaPredicted RBP12.04□□□□□ -0.48
UPF1-213ENST00000601981 CELF2O95319 508 aaKnown RBP12.04□□□□□ -0.48
UPF1-213ENST00000601981 HLA-DOAP06340 250 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 FKBP1BP68106 108 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 TCP10Q12799 353 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 NFIAQ12857 509 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 ZMYM1Q5SVZ6 1142 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 DCAF15Q66K64 600 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 C2orf69Q8N8R5 385 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 JMYQ8N9B5 988 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 TGFBRAP1Q8WUH2 860 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 USP26Q9BXU7 913 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 TRIM34Q9BYJ4 488 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 TMEM39BQ9GZU3 492 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 OSBPL5Q9H0X9 879 aaPredicted RBP12.04□□□□□ -0.48
UPF1-213ENST00000601981 DHX36Q9H2U1 1008 aaKnown RBP12.04□□□□□ -0.48
UPF1-213ENST00000601981 ARMT1Q9H993 441 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 LAMB1P07942 1786 aa12.04□□□□□ -0.48
UPF1-213ENST00000601981 TMEM88BA6NKF7 163 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 GPAA1O43292 621 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 HTRA3P83110 453 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 TTLL12Q14166 644 aaPredicted RBP12.03□□□□□ -0.48
UPF1-213ENST00000601981 MCMDC2Q4G0Z9 681 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 ARMC9Q7Z3E5 817 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 MAPKAPK5Q8IW41 473 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 LCORLQ8N3X6 602 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 OSBP2Q969R2 916 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 NACAP1Q9BZK3 213 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 PUS7LQ9H0K6 701 aaKnown RBP12.03□□□□□ -0.48
UPF1-213ENST00000601981 ATP8A2Q9NTI2 1148 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 DAXXQ9UER7 740 aaPredicted RBP12.03□□□□□ -0.48
UPF1-213ENST00000601981 FAM198AQ9UFP1 575 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 SCAF8Q9UPN6 1271 aaKnown RBP12.03□□□□□ -0.48
UPF1-213ENST00000601981 SLC4A4Q9Y6R1 1079 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 FLT1P17948 1338 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 CNTNAP1P78357 1384 aa12.03□□□□□ -0.48
UPF1-213ENST00000601981 DDX60LQ5H9U9 1706 aaKnown RBP12.03□□□□□ -0.48
UPF1-213ENST00000601981 APPP05067 770 aa12.02□□□□□ -0.49
UPF1-213ENST00000601981 IREB2P48200 963 aaKnown RBP12.02□□□□□ -0.49
UPF1-213ENST00000601981 NMIQ13287 307 aaPredicted RBP12.02□□□□□ -0.49
UPF1-213ENST00000601981 TTC6Q86TZ1 520 aa12.02□□□□□ -0.49
UPF1-213ENST00000601981 CSRNP1Q96S65 589 aa12.02□□□□□ -0.49
UPF1-213ENST00000601981 GBA2Q9HCG7 927 aaPredicted RBP12.02□□□□□ -0.49
UPF1-213ENST00000601981 DDX4Q9NQI0 724 aaKnown RBP12.02□□□□□ -0.49
UPF1-213ENST00000601981 RAD50Q92878 1312 aa12.02□□□□□ -0.49
UPF1-213ENST00000601981 ATRNL1Q5VV63 1379 aa12.02□□□□□ -0.49
UPF1-213ENST00000601981 M0R2C6 588 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 SGSM2O43147 1006 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 POLR3DP05423 398 aaPredicted RBP12.01□□□□□ -0.49
UPF1-213ENST00000601981 SLFNL1Q499Z3 407 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 NBPF12Q5TAG4 269 aaPredicted RBP12.01□□□□□ -0.49
UPF1-213ENST00000601981 PRAMEF18Q5VWM3 479 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 GIMAP6Q6P9H5 292 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 CWC27Q6UX04 472 aaKnown RBP12.01□□□□□ -0.49
UPF1-213ENST00000601981 STRBPQ96SI9 672 aaKnown RBP12.01□□□□□ -0.49
UPF1-213ENST00000601981 KIF2CQ99661 725 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 CREBZFQ9NS37 354 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 MCM9Q9NXL9 1143 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 PI4KBQ9UBF8 816 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 TAOK2Q9UL54 1235 aa12.01□□□□□ -0.49
UPF1-213ENST00000601981 ABT1Q9ULW3 272 aaKnown RBP12.01□□□□□ -0.49
UPF1-213ENST00000601981 OTOFQ9HC10 1997 aa12□□□□□ -0.49
UPF1-213ENST00000601981 A0A0D9SFI3 127 aa12□□□□□ -0.49
UPF1-213ENST00000601981 UNCXA6NJT0 531 aa12□□□□□ -0.49
UPF1-213ENST00000601981 PATL2C9JE40 543 aaKnown RBP12□□□□□ -0.49
UPF1-213ENST00000601981 CHGBP05060 677 aa12□□□□□ -0.49
UPF1-213ENST00000601981 TDO2P48775 406 aa12□□□□□ -0.49
UPF1-213ENST00000601981 CRACR2BQ8N4Y2 399 aaPredicted RBP12□□□□□ -0.49
UPF1-213ENST00000601981 SDR42E1Q8WUS8 393 aa12□□□□□ -0.49
UPF1-213ENST00000601981 SNX21Q969T3 373 aa12□□□□□ -0.49
UPF1-213ENST00000601981 FAM227BQ96M60 508 aa12□□□□□ -0.49
UPF1-213ENST00000601981 TEPSINQ96N21 525 aa12□□□□□ -0.49
UPF1-213ENST00000601981 ZNF341Q9BYN7 854 aa12□□□□□ -0.49
UPF1-213ENST00000601981 DCP1AQ9NPI6 582 aaPredicted RBP12□□□□□ -0.49
UPF1-213ENST00000601981 ARPP21Q9UBL0 812 aaPredicted RBP12□□□□□ -0.49
UPF1-213ENST00000601981 HERC5Q9UII4 1024 aaKnown RBP12□□□□□ -0.49
UPF1-213ENST00000601981 ANGEL1Q9UNK9 670 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms