RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SPDYE6P0CI01 402 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 NEK4P51957 841 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 ZNF280AP59817 542 aaPredicted RBP18.32■□□□□ 0.52
UPF1-206ENST00000598471 PPARAQ07869 468 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 CTR9Q6PD62 1173 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 RALYLQ86SE5 291 aaKnown RBP18.32■□□□□ 0.52
UPF1-206ENST00000598471 NEK1Q96PY6 1258 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 ZSWIM6Q9HCJ5 1215 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 ANAPC4Q9UJX5 808 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 NAV1Q8NEY1 1877 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 ADAMTSL1Q8N6G6 1762 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 USP17L12C9JPN9 530 aa18.31■□□□□ 0.52
UPF1-206ENST00000598471 USP17L21D6R901 530 aa18.31■□□□□ 0.52
UPF1-206ENST00000598471 PCP11498 1178 aaKnown RBP18.31■□□□□ 0.52
UPF1-206ENST00000598471 ADCK5Q3MIX3 580 aa18.31■□□□□ 0.52
UPF1-206ENST00000598471 HSCBQ8IWL3 235 aa18.31■□□□□ 0.52
UPF1-206ENST00000598471 UPF3BQ9BZI7 483 aaKnown RBP18.31■□□□□ 0.52
UPF1-206ENST00000598471 CNNM2Q9H8M5 875 aa18.31■□□□□ 0.52
UPF1-206ENST00000598471 MYOZ2Q9NPC6 264 aa18.31■□□□□ 0.52
UPF1-206ENST00000598471 MKRN1Q9UHC7 482 aaKnown RBP18.31■□□□□ 0.52
UPF1-206ENST00000598471 H7C1D1 291 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 NPM3O75607 178 aaKnown RBP18.3■□□□□ 0.52
UPF1-206ENST00000598471 POLR3DP05423 398 aaPredicted RBP18.3■□□□□ 0.52
UPF1-206ENST00000598471 PICALMQ13492 652 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 AKNAD1Q5T1N1 836 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 MFSD6Q6ZSS7 791 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 RUFY3Q7L099 469 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 MICALL2Q8IY33 904 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 NCOA7Q8NI08 942 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 STAG1Q8WVM7 1258 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 SNX21Q969T3 373 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 IDI2Q9BXS1 227 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 KRT23Q9C075 422 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 DAXXQ9UER7 740 aaPredicted RBP18.3■□□□□ 0.52
UPF1-206ENST00000598471 TAF6LQ9Y6J9 622 aa18.3■□□□□ 0.52
UPF1-206ENST00000598471 GLTPD2A6NH11 291 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 WDHD1O75717 1129 aaPredicted RBP18.29■□□□□ 0.52
UPF1-206ENST00000598471 RPS6KB1P23443 525 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 MCM2P49736 904 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 CTDSPL2Q05D32 466 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 STOX1Q6ZVD7 989 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 TTC6Q86TZ1 520 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 TBC1D10CQ8IV04 446 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 PRMT6Q96LA8 375 aaPredicted RBP18.29■□□□□ 0.52
UPF1-206ENST00000598471 TDRD3Q9H7E2 651 aaKnown RBP18.29■□□□□ 0.52
UPF1-206ENST00000598471 CNOT7Q9UIV1 285 aaKnown RBP18.29■□□□□ 0.52
UPF1-206ENST00000598471 LAMB1P07942 1786 aa18.29■□□□□ 0.52
UPF1-206ENST00000598471 FOCADQ5VW36 1801 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 DDNO94850 711 aaPredicted RBP18.28■□□□□ 0.52
UPF1-206ENST00000598471 LMOD1P29536 600 aaPredicted RBP18.28■□□□□ 0.52
UPF1-206ENST00000598471 NT5C2P49902 561 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 C12orf60Q5U649 245 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 DPY19L2Q6NUT2 758 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 NBPF3Q9H094 633 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 OSBPL5Q9H0X9 879 aaPredicted RBP18.28■□□□□ 0.52
UPF1-206ENST00000598471 ZNF287Q9HBT7 754 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 PDRG1Q9NUG6 133 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 SAP30BPQ9UHR5 308 aaKnown RBP18.28■□□□□ 0.52
UPF1-206ENST00000598471 PCDHAC2Q9Y5I4 1007 aa18.28■□□□□ 0.52
UPF1-206ENST00000598471 DDX60LQ5H9U9 1706 aaKnown RBP18.27■□□□□ 0.52
UPF1-206ENST00000598471 ENTPD3O75355 529 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 HLA-DOAP06340 250 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 PDE4BQ07343 736 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 ANKRD1Q15327 319 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 SPDYE2Q495Y8 402 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 FKBP1CQ5VVH2 108 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 DHX32Q7L7V1 743 aaKnown RBP18.27■□□□□ 0.52
UPF1-206ENST00000598471 ZBED3Q96IU2 234 aaPredicted RBP18.27■□□□□ 0.52
UPF1-206ENST00000598471 TOMM22Q9NS69 142 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 GPRC5DQ9NZD1 345 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 ZNF70Q9UC06 446 aaPredicted RBP18.27■□□□□ 0.52
UPF1-206ENST00000598471 ECM29Q5VYK3 1845 aa18.27■□□□□ 0.52
UPF1-206ENST00000598471 ROBO3Q96MS0 1386 aa18.27■□□□□ 0.51
UPF1-206ENST00000598471 BAZ2AQ9UIF9 1905 aaKnown RBP18.27■□□□□ 0.51
UPF1-206ENST00000598471 CDK5RAP2Q96SN8 1893 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 CYP2D7A0A087X1C5 515 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 CYP2D6P10635 497 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 MCM5P33992 734 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 FGD1P98174 961 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 KIF4BQ2VIQ3 1234 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 ESR2Q92731 530 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 IPO9Q96P70 1041 aaKnown RBP18.26■□□□□ 0.51
UPF1-206ENST00000598471 DHX36Q9H2U1 1008 aaKnown RBP18.26■□□□□ 0.51
UPF1-206ENST00000598471 RRAGCQ9HB90 399 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 GPBP1L1Q9HC44 474 aaPredicted RBP18.26■□□□□ 0.51
UPF1-206ENST00000598471 NMRK2Q9NPI5 230 aa18.26■□□□□ 0.51
UPF1-206ENST00000598471 DDX4Q9NQI0 724 aaKnown RBP18.26■□□□□ 0.51
UPF1-206ENST00000598471 COL2A1P02458 1487 aaPredicted RBP18.26■□□□□ 0.51
UPF1-206ENST00000598471 WDR19Q8NEZ3 1342 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 CLRN2A0PK11 232 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 POTECB2RU33 542 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 WNT10BO00744 389 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 TNNI2P48788 182 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 CACNB3P54284 484 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 NFIAQ12857 509 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 RBM26Q5T8P6 1007 aaKnown RBP18.25■□□□□ 0.51
UPF1-206ENST00000598471 MB21D2Q8IYB1 491 aaPredicted RBP18.25■□□□□ 0.51
UPF1-206ENST00000598471 TTC14Q96N46 770 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 VEZTQ9HBM0 779 aa18.25■□□□□ 0.51
UPF1-206ENST00000598471 TAOK2Q9UL54 1235 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms