RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 TFIP11Q9UBB9 837 aaKnown RBP19.98■□□□□ 0.79
SHKBP1-216ENST00000598201 SYCE3A1L190 88 aa19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 MINDY4BA8MYZ0 360 aa19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 RXRAP19793 462 aa19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 TMEM67Q5HYA8 995 aa19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 APOA5Q6Q788 366 aa19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 C15orf52Q6ZUT6 534 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 MASTLQ96GX5 879 aa19.97■□□□□ 0.79
SHKBP1-216ENST00000598201 CYP2D7A0A087X1C5 515 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 UFL1O94874 794 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 NPR1P16066 1061 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 KCNA3P22001 575 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 ZNF622Q969S3 477 aaKnown RBP eCLIP19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 TOMM22Q9NS69 142 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 AATFQ9NY61 560 aaKnown RBP eCLIP19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 KIF3AQ9Y496 699 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 IFIT3O14879 490 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 DHX16O60231 1041 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 BBOX1O75936 387 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 GUCY1B3Q02153 619 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 CSPP1Q1MSJ5 1256 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 SGMS1Q86VZ5 419 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 CRAMP1Q96RY5 1269 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 ANAPC4Q9UJX5 808 aa19.96■□□□□ 0.79
SHKBP1-216ENST00000598201 ADD1P35611 737 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 GRIK5Q16478 980 aa19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 ZNF804AQ7Z570 1209 aa19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 ZKSCAN3Q9BRR0 538 aa19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 METAP2P50579 478 aaKnown RBP eCLIP19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 STYK1Q6J9G0 422 aa19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 MYL10Q9BUA6 226 aa19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 ZSCAN16Q9H4T2 348 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 GGA1Q9UJY5 639 aa19.95■□□□□ 0.78
SHKBP1-216ENST00000598201 CPLX1O14810 134 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 ATP2B4P23634 1241 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 CDC27P30260 824 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 LIFRP42702 1097 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 NFXL1Q6ZNB6 911 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 MICU3Q86XE3 530 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 RNF41Q9H4P4 317 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 ORC3Q9UBD5 711 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 POLLQ9UGP5 575 aa19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 BAZ2AQ9UIF9 1905 aaKnown RBP19.94■□□□□ 0.78
SHKBP1-216ENST00000598201 ALDH1B1P30837 517 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 EVX2Q03828 476 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 OTUD7BQ6GQQ9 843 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 CTR9Q6PD62 1173 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 DZIP1Q86YF9 867 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 CCDC144CPQ8IYA2 1237 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 WDR66Q8TBY9 1149 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 PIM2Q9P1W9 311 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 ELP1O95163 1332 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 COL11A2P13942 1736 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 MAST2Q6P0Q8 1798 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 ZBTB43O43298 467 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 SPTY2D1Q68D10 685 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 LRSAM1Q6UWE0 723 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 LEO1Q8WVC0 666 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 SYAP1Q96A49 352 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 CD209Q9NNX6 404 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 FAM217BQ9NTX9 383 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 PODXL2Q9NZ53 605 aa19.93■□□□□ 0.78
SHKBP1-216ENST00000598201 KIAA1551Q9HCM1 1747 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 GOLGB1Q14789 3259 aaKnown RBP19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 USP17L12C9JPN9 530 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 USP17L21D6R901 530 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 GIMAP6Q6P9H5 292 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 TBC1D16Q8TBP0 767 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 CNKSR1Q969H4 720 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 SCAND2PQ9GZW5 306 aaPredicted RBP19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 DCP1AQ9NPI6 582 aaPredicted RBP19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 GJB4Q9NTQ9 266 aa19.92■□□□□ 0.78
SHKBP1-216ENST00000598201 LDHBP07195 334 aaKnown RBP19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 SPATA32Q96LK8 384 aa19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 CRNKL1Q9BZJ0 848 aaKnown RBP19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 RBSNQ9H1K0 784 aa19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 TTLL6Q8N841 843 aa19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 SLC12A7Q9Y666 1083 aa19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 CCDC88AQ3V6T2 1871 aa19.91■□□□□ 0.78
SHKBP1-216ENST00000598201 CCDC69A6NI79 296 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 GOLGA8AA7E2F4 631 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 PPEF1O14829 653 aaPredicted RBP19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 DIXDC1Q155Q3 683 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 NTRK3Q16288 839 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 UBE2Q2Q8WVN8 375 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 C8orf76Q96K31 380 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 IL1R1P14778 569 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 WTAPQ15007 396 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 CCDC183Q5T5S1 534 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 TMED8Q6PL24 325 aaPredicted RBP19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 AIFM3Q96NN9 605 aa19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 FTOQ9C0B1 505 aaKnown RBP eCLIP19.9■□□□□ 0.78
SHKBP1-216ENST00000598201 RANBP6O60518 1105 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 PRDM1O75626 825 aa19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 SART3Q15020 963 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 SP8Q8IXZ3 490 aa19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 FBXO18Q8NFZ0 1043 aa19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 ESR2Q92731 530 aa19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 PHKBQ93100 1093 aa19.89■□□□□ 0.77
SHKBP1-216ENST00000598201 DLEC1Q9Y238 1755 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms