RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ANKLE1Q8NAG6 615 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 COA7Q96BR5 231 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 FAM198AQ9UFP1 575 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 STXBP5LQ9Y2K9 1186 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 ZHX2Q9Y6X8 837 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 ATRNL1Q5VV63 1379 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 PHF20L1A8MW92 1017 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 PTPRAP18433 802 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 FGFR2P21802 821 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 DIXDC1Q155Q3 683 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 LRIT3Q3SXY7 679 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 C7orf61Q8IZ16 206 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 DIS3LQ8TF46 1054 aaKnown RBP12.71□□□□□ -0.37
TRIM28-210ENST00000597618 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.71□□□□□ -0.378e-10■□□□□ 9
TRIM28-210ENST00000597618 TAOK2Q9UL54 1235 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 AFG3L2Q9Y4W6 797 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 MGAMO43451 1857 aa12.71□□□□□ -0.37
TRIM28-210ENST00000597618 VCANP13611 3396 aa12.7□□□□□ -0.38
TRIM28-210ENST00000597618 SLC5A1P13866 664 aa12.7□□□□□ -0.38
TRIM28-210ENST00000597618 ANKRD44Q8N8A2 993 aa12.7□□□□□ -0.38
TRIM28-210ENST00000597618 USP40Q9NVE5 1235 aa12.7□□□□□ -0.38
TRIM28-210ENST00000597618 ENTPD3O75355 529 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 HMGCRP04035 888 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 LDHBP07195 334 aaKnown RBP12.69□□□□□ -0.38
TRIM28-210ENST00000597618 PRDX5P30044 214 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 FAM110CQ1W6H9 321 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 TDHQ8IZJ6 230 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 LPIN2Q92539 896 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 NBPF3Q9H094 633 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 PNMA3Q9UL41 463 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 ZMYND8Q9ULU4 1186 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-210ENST00000597618 AGTPBP1Q9UPW5 1226 aa12.69□□□□□ -0.38
TRIM28-210ENST00000597618 LRRFIP2Q9Y608 721 aaKnown RBP12.69□□□□□ -0.38
TRIM28-210ENST00000597618 LAMA2P24043 3122 aaKnown RBP12.68□□□□□ -0.38
TRIM28-210ENST00000597618 TRIM75PA6NK02 468 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 CTNND1O60716 968 aaKnown RBP12.68□□□□□ -0.38
TRIM28-210ENST00000597618 RGS3P49796 1198 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 Q7L0L9 218 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 ZFPM1Q8IX07 1006 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 ANKRD13CQ8N6S4 541 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 KLHDC4Q8TBB5 520 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 IDI2Q9BXS1 227 aa12.68□□□□□ -0.38
TRIM28-210ENST00000597618 SPINK5Q9NQ38 1064 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-210ENST00000597618 GNL3LQ9NVN8 582 aaKnown RBP12.68□□□□□ -0.38
TRIM28-210ENST00000597618 SALL1Q9NSC2 1324 aa12.67□□□□□ -0.38
TRIM28-210ENST00000597618 MAGEA10P43363 369 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-210ENST00000597618 MAP3K10Q02779 954 aa12.67□□□□□ -0.38
TRIM28-210ENST00000597618 ZSCAN29Q8IWY8 852 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-210ENST00000597618 C11orf49Q9H6J7 331 aa12.67□□□□□ -0.38
TRIM28-210ENST00000597618 HMX1Q9NP08 348 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-210ENST00000597618 MTMR10Q9NXD2 777 aa12.67□□□□□ -0.38
TRIM28-210ENST00000597618 RFX7Q2KHR2 1363 aa12.67□□□□□ -0.38
TRIM28-210ENST00000597618 DOCK2Q92608 1830 aa12.67□□□□□ -0.38
TRIM28-210ENST00000597618 AK9Q5TCS8 1911 aa12.66□□□□□ -0.38
TRIM28-210ENST00000597618 ALPK3Q96L96 1907 aa12.66□□□□□ -0.38
TRIM28-210ENST00000597618 RPTORQ8N122 1335 aa12.66□□□□□ -0.38
TRIM28-210ENST00000597618 EYA2O00167 538 aa12.66□□□□□ -0.38
TRIM28-210ENST00000597618 SEMA3EO15041 775 aa12.66□□□□□ -0.38
TRIM28-210ENST00000597618 GCLCP48506 637 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-210ENST00000597618 CCDC184Q52MB2 194 aa12.66□□□□□ -0.38
TRIM28-210ENST00000597618 PROCA1Q8NCQ7 364 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-210ENST00000597618 UBE2OQ9C0C9 1292 aaKnown RBP12.66□□□□□ -0.38
TRIM28-210ENST00000597618 GAKO14976 1311 aa12.65□□□□□ -0.38
TRIM28-210ENST00000597618 SYN1P17600 705 aa12.65□□□□□ -0.38
TRIM28-210ENST00000597618 PABPC4Q13310 644 aaKnown RBP eCLIP12.65□□□□□ -0.38
TRIM28-210ENST00000597618 TREML2Q5T2D2 321 aa12.65□□□□□ -0.38
TRIM28-210ENST00000597618 SH3BP5LQ7L8J4 393 aa12.65□□□□□ -0.38
TRIM28-210ENST00000597618 ZGPATQ8N5A5 531 aaKnown RBP12.65□□□□□ -0.38
TRIM28-210ENST00000597618 DENND2AQ9ULE3 1009 aa12.65□□□□□ -0.38
TRIM28-210ENST00000597618 SALL2Q9Y467 1007 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-210ENST00000597618 MYH13Q9UKX3 1938 aa12.64□□□□□ -0.39
TRIM28-210ENST00000597618 DOCK1Q14185 1865 aa12.64□□□□□ -0.39
TRIM28-210ENST00000597618 ATP2B3Q16720 1220 aa12.64□□□□□ -0.39
TRIM28-210ENST00000597618 SLF2Q8IX21 1173 aa12.64□□□□□ -0.39
TRIM28-210ENST00000597618 COL25A1Q9BXS0 654 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-210ENST00000597618 OGDHLQ9ULD0 1010 aa12.64□□□□□ -0.39
TRIM28-210ENST00000597618 PTPRFP10586 1907 aa12.64□□□□□ -0.39
TRIM28-210ENST00000597618 DDTLA6NHG4 134 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-210ENST00000597618 RFX5P48382 616 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-210ENST00000597618 DZIP1Q86YF9 867 aaKnown RBP12.63□□□□□ -0.39
TRIM28-210ENST00000597618 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.63□□□□□ -0.39
TRIM28-210ENST00000597618 TBC1D2Q9BYX2 928 aa12.63□□□□□ -0.39
TRIM28-210ENST00000597618 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-210ENST00000597618 FBXO3Q9UK99 471 aa12.63□□□□□ -0.39
TRIM28-210ENST00000597618 GJD2Q9UKL4 321 aa12.63□□□□□ -0.39
TRIM28-210ENST00000597618 PTPRCP08575 1304 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 DDX60LQ5H9U9 1706 aaKnown RBP12.62□□□□□ -0.39
TRIM28-210ENST00000597618 EYSQ5T1H1 3165 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 ZBTB22O15209 634 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 TBC1D12O60347 775 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 PRKAR2AP13861 404 aaKnown RBP12.62□□□□□ -0.39
TRIM28-210ENST00000597618 TRIM32Q13049 653 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 PICALMQ13492 652 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 MAP3K21Q5TCX8 1036 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 ATG9AQ7Z3C6 839 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 CCDC84Q86UT8 332 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-210ENST00000597618 TRIB2Q92519 343 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 USP44Q9H0E7 712 aa12.62□□□□□ -0.39
TRIM28-210ENST00000597618 DDX4Q9NQI0 724 aaKnown RBP12.62□□□□□ -0.39
TRIM28-210ENST00000597618 SPTBN5Q9NRC6 3674 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms