RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ADAM23O75077 832 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 PF4P02776 101 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 FURINP09958 794 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 FBLIM1Q8WUP2 373 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 COPRSQ9NQ92 184 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 METTL5Q9NRN9 209 aaKnown RBP8.07□□□□□ -1.12
SMAD4-216ENST00000593223 CRIM1Q9NZV1 1036 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 STOML1Q9UBI4 398 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 RAXQ9Y2V3 346 aa8.07□□□□□ -1.12
SMAD4-216ENST00000593223 RNGTTO60942 597 aaKnown RBP8.06□□□□□ -1.12
SMAD4-216ENST00000593223 MAP4P27816 1152 aaKnown RBP8.06□□□□□ -1.12
SMAD4-216ENST00000593223 FANCCQ00597 558 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 FAM160A1Q05DH4 1040 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 PTPN11Q06124 597 aaPredicted RBP8.06□□□□□ -1.12
SMAD4-216ENST00000593223 CAMK2GQ13555 558 aaPredicted RBP8.06□□□□□ -1.12
SMAD4-216ENST00000593223 ZC3H12AQ5D1E8 599 aaKnown RBP8.06□□□□□ -1.12
SMAD4-216ENST00000593223 SNAP47Q5SQN1 464 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 CDPF1Q6NVV7 123 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 PRR23CQ6ZRP0 262 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 BEND4Q6ZU67 534 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 ERMP1Q7Z2K6 904 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 GAL3ST3Q96A11 431 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 FANCD2OSQ96PS1 177 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 FAM105AQ9NUU6 356 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 CACNA2D2Q9NY47 1150 aa8.06□□□□□ -1.12
SMAD4-216ENST00000593223 LMNB2Q03252 620 aa8.05□□□□□ -1.12
SMAD4-216ENST00000593223 NFKBIBQ15653 356 aa8.05□□□□□ -1.12
SMAD4-216ENST00000593223 RSPO4Q2I0M5 234 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-216ENST00000593223 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-216ENST00000593223 HDXQ7Z353 690 aa8.05□□□□□ -1.12
SMAD4-216ENST00000593223 C12orf40Q86WS4 652 aa8.05□□□□□ -1.12
SMAD4-216ENST00000593223 TRIM42Q8IWZ5 723 aa8.05□□□□□ -1.12
SMAD4-216ENST00000593223 SSU72Q9NP77 194 aaKnown RBP8.05□□□□□ -1.12
SMAD4-216ENST00000593223 PCDHGC5Q9Y5F6 944 aa8.05□□□□□ -1.12
SMAD4-216ENST00000593223 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-216ENST00000593223 FAM95CA0A1B0GW59 222 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 E9PSI1 815 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 BPNT1O95861 308 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 H2AFB1P0C5Y9 115 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 H2AFB2P0C5Z0 115 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 HCLS1P14317 486 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-216ENST00000593223 TTLL4Q14679 1199 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 NKAPLQ5M9Q1 402 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 WIPI1Q5MNZ9 446 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-216ENST00000593223 USP48Q86UV5 1035 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 CLEC10AQ8IUN9 316 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 GOLM1Q8NBJ4 401 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 DISC1Q9NRI5 854 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 DAGLAQ9Y4D2 1042 aa8.04□□□□□ -1.12
SMAD4-216ENST00000593223 HMX2A2RU54 273 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 PRAMEF27A3QJZ7 478 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 NFICP08651 508 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 EIF4A3P38919 411 aaKnown RBP8.03□□□□□ -1.12
SMAD4-216ENST00000593223 ERVK-24P63145 666 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 INPP5AQ14642 412 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 PPM1JQ5JR12 505 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 LRFN4Q6PJG9 635 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 PAOXQ6QHF9 649 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 PLPPR2Q96GM1 343 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 RHOVQ96L33 236 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 SEMA6BQ9H3T3 888 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 LGR6Q9HBX8 967 aa8.03□□□□□ -1.12
SMAD4-216ENST00000593223 DYRK3O43781 588 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 MAP7Q14244 749 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 C9orf131Q5VYM1 1079 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 BNC2Q6ZN30 1099 aaPredicted RBP8.02□□□□□ -1.13
SMAD4-216ENST00000593223 CCDC84Q86UT8 332 aaPredicted RBP8.02□□□□□ -1.13
SMAD4-216ENST00000593223 SMYD4Q8IYR2 804 aaPredicted RBP8.02□□□□□ -1.13
SMAD4-216ENST00000593223 RNF214Q8ND24 703 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 FAM83CQ9BQN1 747 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 GSX1Q9H4S2 264 aaPredicted RBP8.02□□□□□ -1.13
SMAD4-216ENST00000593223 ACSS3Q9H6R3 686 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 C7orf69Q9H7B7 122 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 SNCAIPQ9Y6H5 919 aa8.02□□□□□ -1.13
SMAD4-216ENST00000593223 F13A1P00488 732 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 CDK8P49336 464 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 HDLBPQ00341 1268 aaKnown RBP8.01□□□□□ -1.13
SMAD4-216ENST00000593223 RPL6Q02878 288 aaKnown RBP8.01□□□□□ -1.13
SMAD4-216ENST00000593223 ZNF394Q53GI3 561 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 CDC37L1Q7L3B6 337 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 GATAD2BQ8WXI9 593 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 SEMA6CQ9H3T2 930 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 SUPT16HQ9Y5B9 1047 aaKnown RBP8.01□□□□□ -1.13
SMAD4-216ENST00000593223 PCDHGB7Q9Y5F8 929 aa8.01□□□□□ -1.13
SMAD4-216ENST00000593223 KRTAP9-1A8MXZ3 250 aaPredicted RBP8□□□□□ -1.13
SMAD4-216ENST00000593223 ETF1P62495 437 aaKnown RBP8□□□□□ -1.13
SMAD4-216ENST00000593223 ZNF296Q8WUU4 475 aaPredicted RBP8□□□□□ -1.13
SMAD4-216ENST00000593223 EZH1Q92800 747 aaPredicted RBP8□□□□□ -1.13
SMAD4-216ENST00000593223 K7ELQ4 463 aaPredicted RBP7.99□□□□□ -1.13
SMAD4-216ENST00000593223 FANCGO15287 622 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 NEFMP07197 916 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 FSTP19883 344 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 ZBTB37Q5TC79 503 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 FBXL19Q6PCT2 694 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 CYFIP1Q7L576 1253 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 NT5DC4Q86YG4 428 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.99□□□□□ -1.13
SMAD4-216ENST00000593223 ISL2Q96A47 359 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 SPON2Q9BUD6 331 aa7.99□□□□□ -1.13
SMAD4-216ENST00000593223 ADAMTS1Q9UHI8 967 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms