RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 WDR19Q8NEZ3 1342 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.52□□□□□ -0.41
VPS4B-206ENST00000591475 SLFN14P0C7P3 912 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 PFKFB1P16118 471 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 HAND2P61296 217 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 FKBP4Q02790 459 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS4B-206ENST00000591475 NCAPHQ15003 741 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 WASHC4Q2M389 1173 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 CCDC158Q5M9N0 1113 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 TTC39AQ5SRH9 613 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 TAF3Q5VWG9 929 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 SYT10Q6XYQ8 523 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 RALYLQ86SE5 291 aaKnown RBP12.52□□□□□ -0.41
VPS4B-206ENST00000591475 AMIGO3Q86WK7 504 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 NCOA7Q8NI08 942 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 ZNF594Q96JF6 807 aaPredicted RBP12.52□□□□□ -0.41
VPS4B-206ENST00000591475 TIGD1Q96MW7 591 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 CEP126Q9P2H0 1117 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 HPS5Q9UPZ3 1129 aa12.52□□□□□ -0.41
VPS4B-206ENST00000591475 ECM29Q5VYK3 1845 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 FANCCQ00597 558 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 KIF23Q02241 960 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-206ENST00000591475 AXDND1Q5T1B0 1012 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-206ENST00000591475 GORABQ5T7V8 394 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 SMIM5Q71RC9 77 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 FAM89AQ96GI7 184 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 NUP98P52948 1817 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 RGPD3A6NKT7 1758 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-206ENST00000591475 RGPD4Q7Z3J3 1758 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 CDHR2Q9BYE9 1310 aa12.51□□□□□ -0.41
VPS4B-206ENST00000591475 KIF28PB7ZC32 967 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 CBFA2T2O43439 604 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 FGAP02671 866 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 CCDC93Q567U6 631 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 CAMKK2Q96RR4 588 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 TFCP2L1Q9NZI6 479 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 AKAP2Q9Y2D5 859 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 ANKRD36CQ5JPF3 1778 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 FOXP2O15409 715 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 H2AFXP16104 143 aaPredicted RBP12.5□□□□□ -0.41
VPS4B-206ENST00000591475 LMOD1P29536 600 aaPredicted RBP12.5□□□□□ -0.41
VPS4B-206ENST00000591475 BAG6P46379 1132 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 SLC39A14Q15043 492 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 TERF2Q15554 542 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 HOMER1Q86YM7 354 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 CCDC125Q86Z20 511 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 APPBP2Q92624 585 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 AKT1S1Q96B36 256 aa12.5□□□□□ -0.41
VPS4B-206ENST00000591475 UTP14AQ9BVJ6 771 aaKnown RBP12.5□□□□□ -0.41
VPS4B-206ENST00000591475 SRP68Q9UHB9 627 aaKnown RBP12.5□□□□□ -0.41
VPS4B-206ENST00000591475 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS4B-206ENST00000591475 ABCC12Q96J65 1359 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 MROH7-TTC4A0A0A0MT08 1334 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 PHLPP2Q6ZVD8 1323 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 ZNF213O14771 459 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 SYKP43405 635 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 ANTXR2P58335 489 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 FAM193AP78312 1265 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 EN1Q05925 392 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-206ENST00000591475 BMS1Q14692 1282 aaKnown RBP12.49□□□□□ -0.41
VPS4B-206ENST00000591475 SUSD4Q5VX71 490 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 JMYQ8N9B5 988 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 FLAD1Q8NFF5 587 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 SETDB2Q96T68 719 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 PLA2G12BQ9BX93 195 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 PUS3Q9BZE2 481 aaKnown RBP12.49□□□□□ -0.41
VPS4B-206ENST00000591475 GJB4Q9NTQ9 266 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 TUBE1Q9UJT0 475 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 BCORQ6W2J9 1755 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 PPP6R2O75170 966 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 WDHD1O75717 1129 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-206ENST00000591475 ETF1P62495 437 aaKnown RBP12.49□□□□□ -0.41
VPS4B-206ENST00000591475 EZH2Q15910 746 aaKnown RBP12.49□□□□□ -0.41
VPS4B-206ENST00000591475 ERCC6LQ2NKX8 1250 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 RAB11FIP4Q86YS3 637 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 XAGE2Q96GT9 111 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 FBXO3Q9UK99 471 aa12.49□□□□□ -0.41
VPS4B-206ENST00000591475 ZMYM6O95789 1325 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 SCN7AQ01118 1682 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 IRS4O14654 1257 aaPredicted RBP12.48□□□□□ -0.41
VPS4B-206ENST00000591475 NPHP1O15259 732 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 MYO1BO43795 1136 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 CDKL5O76039 1030 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 MARCKSP29966 332 aaPredicted RBP12.48□□□□□ -0.41
VPS4B-206ENST00000591475 UBASH3AP57075 661 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 MYL5Q02045 173 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 CCDC57Q2TAC2 916 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 TBC1D9BQ66K14 1250 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 ZNF446Q9NWS9 450 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 HPSEQ9Y251 543 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 UBR3Q6ZT12 1888 aa12.48□□□□□ -0.41
VPS4B-206ENST00000591475 NTSR2O95665 410 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 SERPINC1P01008 464 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 ADORA1P30542 326 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 TRDNQ13061 729 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 ZNF827Q17R98 1081 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 ISM2Q6H9L7 571 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 OLFM4Q6UX06 510 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 ALG1Q9BT22 464 aa12.47□□□□□ -0.41
VPS4B-206ENST00000591475 HSD3B7Q9H2F3 369 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms