RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 WEE1P30291 646 aa10.85□□□□□ -0.67
SMAD4-209ENST00000589941 TRIM22Q8IYM9 498 aa10.85□□□□□ -0.67
SMAD4-209ENST00000589941 ZNF837Q96EG3 531 aaPredicted RBP10.85□□□□□ -0.67
SMAD4-209ENST00000589941 COG3Q96JB2 828 aa10.85□□□□□ -0.67
SMAD4-209ENST00000589941 ZNF232Q9UNY5 417 aa10.85□□□□□ -0.67
SMAD4-209ENST00000589941 COL4A5P29400 1685 aa10.85□□□□□ -0.67
SMAD4-209ENST00000589941 MKI67P46013 3256 aaKnown RBP10.85□□□□□ -0.67
SMAD4-209ENST00000589941 CRKLP46109 303 aaKnown RBP10.84□□□□□ -0.67
SMAD4-209ENST00000589941 C2CD5Q86YS7 1000 aa10.84□□□□□ -0.67
SMAD4-209ENST00000589941 IRF7Q92985 503 aa10.84□□□□□ -0.67
SMAD4-209ENST00000589941 PRIMPOLQ96LW4 560 aa10.84□□□□□ -0.67
SMAD4-209ENST00000589941 HCN4Q9Y3Q4 1203 aa10.84□□□□□ -0.67
SMAD4-209ENST00000589941 ROCK2O75116 1388 aaKnown RBP10.84□□□□□ -0.67
SMAD4-209ENST00000589941 FLT4P35916 1363 aa10.84□□□□□ -0.67
SMAD4-209ENST00000589941 SZT2Q5T011 3432 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 CARNS1A5YM72 827 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 PHKG2P15735 406 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 IGFBP4P22692 258 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 NFIXQ14938 502 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 SWI5Q1ZZU3 235 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 USPL1Q5W0Q7 1092 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 C2orf49Q9BVC5 232 aaPredicted RBP10.83□□□□□ -0.68
SMAD4-209ENST00000589941 RNF123Q5XPI4 1314 aa10.83□□□□□ -0.68
SMAD4-209ENST00000589941 AKAP11Q9UKA4 1901 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 IQCA1LA6NCM1 817 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 PRMT3O60678 531 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 GMPRP36959 345 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 SV2AQ7L0J3 742 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 CNTROBQ8N137 903 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 GPR101Q96P66 508 aaPredicted RBP10.82□□□□□ -0.68
SMAD4-209ENST00000589941 ZDHHC3Q9NYG2 299 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 LTBP3Q9NS15 1303 aa10.82□□□□□ -0.68
SMAD4-209ENST00000589941 UBR2Q8IWV8 1755 aa10.81□□□□□ -0.68
SMAD4-209ENST00000589941 OCLNQ16625 522 aa10.81□□□□□ -0.68
SMAD4-209ENST00000589941 C7orf43Q8WVR3 580 aa10.81□□□□□ -0.68
SMAD4-209ENST00000589941 NUCKS1Q9H1E3 243 aaKnown RBP10.81□□□□□ -0.68
SMAD4-209ENST00000589941 TAOK3Q9H2K8 898 aa10.81□□□□□ -0.68
SMAD4-209ENST00000589941 CRISPLD1Q9H336 500 aa10.81□□□□□ -0.68
SMAD4-209ENST00000589941 DDX21Q9NR30 783 aaKnown RBP eCLIP10.81□□□□□ -0.68
SMAD4-209ENST00000589941 TERF2IPQ9NYB0 399 aa10.81□□□□□ -0.68
SMAD4-209ENST00000589941 GPR25O00155 361 aa10.8□□□□□ -0.68
SMAD4-209ENST00000589941 TRAF5O00463 557 aa10.8□□□□□ -0.68
SMAD4-209ENST00000589941 EPHX2P34913 555 aa10.8□□□□□ -0.68
SMAD4-209ENST00000589941 HIRAP54198 1017 aaPredicted RBP10.8□□□□□ -0.68
SMAD4-209ENST00000589941 UBAP2LQ14157 1087 aaKnown RBP10.8□□□□□ -0.68
SMAD4-209ENST00000589941 STAG2Q8N3U4 1231 aa10.8□□□□□ -0.68
SMAD4-209ENST00000589941 GTPBP3Q969Y2 492 aaKnown RBP10.8□□□□□ -0.68
SMAD4-209ENST00000589941 ZIC5Q96T25 663 aa10.8□□□□□ -0.68
SMAD4-209ENST00000589941 GGNBP2Q9H3C7 697 aa10.8□□□□□ -0.68
SMAD4-209ENST00000589941 TONSLQ96HA7 1378 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 H7C1W4 665 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 PTCD1O75127 700 aaKnown RBP10.79□□□□□ -0.68
SMAD4-209ENST00000589941 HABP4Q5JVS0 413 aaKnown RBP10.79□□□□□ -0.68
SMAD4-209ENST00000589941 INTS5Q6P9B9 1019 aaKnown RBP10.79□□□□□ -0.68
SMAD4-209ENST00000589941 PGBD3Q8N328 593 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 C1orf216Q8TAB5 229 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 CLP1Q92989 425 aaKnown RBP10.79□□□□□ -0.68
SMAD4-209ENST00000589941 PHACTR1Q9C0D0 580 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 HACL1Q9UJ83 578 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 SPG7Q9UQ90 795 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 CHMP3Q9Y3E7 222 aa10.79□□□□□ -0.68
SMAD4-209ENST00000589941 SOS1Q07889 1333 aaPredicted RBP10.79□□□□□ -0.68
SMAD4-209ENST00000589941 COL15A1P39059 1388 aa10.78□□□□□ -0.68
SMAD4-209ENST00000589941 A0A1W2PNR3 127 aa10.78□□□□□ -0.68
SMAD4-209ENST00000589941 SERPINB2P05120 415 aa10.78□□□□□ -0.68
SMAD4-209ENST00000589941 FKBP5Q13451 457 aaPredicted RBP10.78□□□□□ -0.68
SMAD4-209ENST00000589941 ARSJQ5FYB0 599 aaPredicted RBP10.78□□□□□ -0.68
SMAD4-209ENST00000589941 CST9Q5W186 159 aa10.78□□□□□ -0.68
SMAD4-209ENST00000589941 GMCL1Q96IK5 515 aa10.78□□□□□ -0.68
SMAD4-209ENST00000589941 HTTP42858 3142 aa10.78□□□□□ -0.68
SMAD4-209ENST00000589941 H0YIN7 160 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 ECE1P42892 770 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 KRT76Q01546 638 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 RNFT1Q5M7Z0 435 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 CIAPIN1Q6FI81 312 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 ALDH16A1Q8IZ83 802 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 IFNL2Q8IZJ0 200 aa10.77□□□□□ -0.69
SMAD4-209ENST00000589941 ZNF622Q969S3 477 aaKnown RBP eCLIP10.77□□□□□ -0.69
SMAD4-209ENST00000589941 RBBP6Q7Z6E9 1792 aaKnown RBP10.76□□□□□ -0.69
SMAD4-209ENST00000589941 PAPPA2Q9BXP8 1791 aa10.76□□□□□ -0.69
SMAD4-209ENST00000589941 BICDL1Q6ZP65 573 aa10.76□□□□□ -0.69
SMAD4-209ENST00000589941 COL25A1Q9BXS0 654 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-209ENST00000589941 CXXC1Q9P0U4 656 aaPredicted RBP10.76□□□□□ -0.69
SMAD4-209ENST00000589941 FXR1P51114 621 aaKnown RBP eCLIP10.75□□□□□ -0.69
SMAD4-209ENST00000589941 GAS6Q14393 721 aa10.75□□□□□ -0.69
SMAD4-209ENST00000589941 LBRQ14739 615 aaKnown RBP10.75□□□□□ -0.69
SMAD4-209ENST00000589941 EFHC2Q5JST6 749 aa10.75□□□□□ -0.69
SMAD4-209ENST00000589941 C1orf53Q5VUE5 145 aa10.75□□□□□ -0.69
SMAD4-209ENST00000589941 PRPF40BQ6NWY9 871 aaKnown RBP10.75□□□□□ -0.69
SMAD4-209ENST00000589941 OLFM4Q6UX06 510 aa10.75□□□□□ -0.69
SMAD4-209ENST00000589941 RHPN1Q8TCX5 695 aa10.75□□□□□ -0.69
SMAD4-209ENST00000589941 KIF24Q5T7B8 1368 aa10.75□□□□□ -0.69
SMAD4-209ENST00000589941 COL6A3P12111 3177 aa10.74□□□□□ -0.69
SMAD4-209ENST00000589941 CUL9Q8IWT3 2517 aa10.74□□□□□ -0.69
SMAD4-209ENST00000589941 FYB1O15117 783 aa10.74□□□□□ -0.69
SMAD4-209ENST00000589941 MAP2K2P36507 400 aa10.74□□□□□ -0.69
SMAD4-209ENST00000589941 CAPN12Q6ZSI9 719 aa10.74□□□□□ -0.69
SMAD4-209ENST00000589941 DNAJC10Q8IXB1 793 aa10.74□□□□□ -0.69
SMAD4-209ENST00000589941 ZCCHC2Q9C0B9 1178 aaKnown RBP10.74□□□□□ -0.69
SMAD4-209ENST00000589941 ZNF277Q9NRM2 450 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms