RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MYH2Q9UKX2 1941 aa13.87□□□□□ -0.19
VPS4B-202ENST00000588059 PHF20L1A8MW92 1017 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 PRDX5P30044 214 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 FASTKD5Q7L8L6 764 aaKnown RBP13.86□□□□□ -0.19
VPS4B-202ENST00000588059 ZFPM1Q8IX07 1006 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 SCYL3Q8IZE3 742 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 CRISPLD2Q9H0B8 497 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 SLC45A1Q9Y2W3 748 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 ZHX2Q9Y6X8 837 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 CUL9Q8IWT3 2517 aa13.86□□□□□ -0.19
VPS4B-202ENST00000588059 RFX7Q2KHR2 1363 aa13.85□□□□□ -0.19
VPS4B-202ENST00000588059 TNPO2O14787 897 aaKnown RBP13.85□□□□□ -0.19
VPS4B-202ENST00000588059 TFRCP02786 760 aaKnown RBP13.85□□□□□ -0.19
VPS4B-202ENST00000588059 SLC5A1P13866 664 aa13.85□□□□□ -0.19
VPS4B-202ENST00000588059 CAPN2P17655 700 aa13.85□□□□□ -0.19
VPS4B-202ENST00000588059 PTPRAP18433 802 aa13.85□□□□□ -0.19
VPS4B-202ENST00000588059 GADL1Q6ZQY3 521 aa13.85□□□□□ -0.19
VPS4B-202ENST00000588059 DIS3LQ8TF46 1054 aaKnown RBP13.85□□□□□ -0.19
VPS4B-202ENST00000588059 DDX60LQ5H9U9 1706 aaKnown RBP13.84□□□□□ -0.19
VPS4B-202ENST00000588059 LOC285556D6RIA3 1793 aa13.84□□□□□ -0.19
VPS4B-202ENST00000588059 PAWRQ96IZ0 340 aaKnown RBP13.84□□□□□ -0.19
VPS4B-202ENST00000588059 GDF15Q99988 308 aa13.84□□□□□ -0.19
VPS4B-202ENST00000588059 PICK1Q9NRD5 415 aa13.84□□□□□ -0.19
VPS4B-202ENST00000588059 USP40Q9NVE5 1235 aa13.84□□□□□ -0.19
VPS4B-202ENST00000588059 AFG3L2Q9Y4W6 797 aa13.84□□□□□ -0.19
VPS4B-202ENST00000588059 EYA2O00167 538 aa13.83□□□□□ -0.2
VPS4B-202ENST00000588059 ANP32CO43423 234 aa13.83□□□□□ -0.2
VPS4B-202ENST00000588059 RFX5P48382 616 aaPredicted RBP13.83□□□□□ -0.2
VPS4B-202ENST00000588059 RGS3P49796 1198 aa13.83□□□□□ -0.2
VPS4B-202ENST00000588059 MNX1P50219 401 aaPredicted RBP13.83□□□□□ -0.2
VPS4B-202ENST00000588059 SH3BP5LQ7L8J4 393 aa13.83□□□□□ -0.2
VPS4B-202ENST00000588059 SMCR8Q8TEV9 937 aaPredicted RBP13.83□□□□□ -0.2
VPS4B-202ENST00000588059 LPIN2Q92539 896 aa13.83□□□□□ -0.2
VPS4B-202ENST00000588059 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.83□□□□□ -0.2
VPS4B-202ENST00000588059 SALL1Q9NSC2 1324 aa13.83□□□□□ -0.2
VPS4B-202ENST00000588059 ENTPD3O75355 529 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 LDHBP07195 334 aaKnown RBP13.82□□□□□ -0.2
VPS4B-202ENST00000588059 SLURP2P0DP57 97 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 BMP8BP34820 402 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 GPR153Q6NV75 609 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 NECAB2Q7Z6G3 386 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 C7orf61Q8IZ16 206 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 ANKRD13CQ8N6S4 541 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 IDI2Q9BXS1 227 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.82□□□□□ -0.2
VPS4B-202ENST00000588059 TAOK2Q9UL54 1235 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 ATAD5Q96QE3 1844 aa13.82□□□□□ -0.2
VPS4B-202ENST00000588059 PLXNB2O15031 1838 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 TRIM75PA6NK02 468 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 MAP3K10Q02779 954 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 FAM110CQ1W6H9 321 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 ATG9AQ7Z3C6 839 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 COA7Q96BR5 231 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 USP44Q9H0E7 712 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 ZMYND8Q9ULU4 1186 aaPredicted RBP13.81□□□□□ -0.2
VPS4B-202ENST00000588059 AGTPBP1Q9UPW5 1226 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 LRRFIP2Q9Y608 721 aaKnown RBP13.81□□□□□ -0.2
VPS4B-202ENST00000588059 GAKO14976 1311 aa13.81□□□□□ -0.2
VPS4B-202ENST00000588059 DDTLA6NHG4 134 aaPredicted RBP13.8□□□□□ -0.2
VPS4B-202ENST00000588059 TREML2Q5T2D2 321 aa13.8□□□□□ -0.2
VPS4B-202ENST00000588059 CCDC84Q86UT8 332 aaPredicted RBP13.8□□□□□ -0.2
VPS4B-202ENST00000588059 DEFB123Q8N688 67 aa13.8□□□□□ -0.2
VPS4B-202ENST00000588059 ANKLE1Q8NAG6 615 aa13.8□□□□□ -0.2
VPS4B-202ENST00000588059 MRS2Q9HD23 443 aa13.8□□□□□ -0.2
VPS4B-202ENST00000588059 CTNND1O60716 968 aaKnown RBP13.79□□□□□ -0.2
VPS4B-202ENST00000588059 HMGCRP04035 888 aa13.79□□□□□ -0.2
VPS4B-202ENST00000588059 PHKA1P46020 1223 aa13.79□□□□□ -0.2
VPS4B-202ENST00000588059 ATP2B3Q16720 1220 aa13.79□□□□□ -0.2
VPS4B-202ENST00000588059 Q7L0L9 218 aa13.79□□□□□ -0.2
VPS4B-202ENST00000588059 ZSCAN29Q8IWY8 852 aaPredicted RBP13.79□□□□□ -0.2
VPS4B-202ENST00000588059 MRPL50Q8N5N7 158 aaKnown RBP13.79□□□□□ -0.2
VPS4B-202ENST00000588059 DDX4Q9NQI0 724 aaKnown RBP13.79□□□□□ -0.2
VPS4B-202ENST00000588059 SEMA3EO15041 775 aa13.78□□□□□ -0.2
VPS4B-202ENST00000588059 LRIT3Q3SXY7 679 aa13.78□□□□□ -0.2
VPS4B-202ENST00000588059 GNL3LQ9NVN8 582 aaKnown RBP13.78□□□□□ -0.2
VPS4B-202ENST00000588059 PNMA3Q9UL41 463 aa13.78□□□□□ -0.2
VPS4B-202ENST00000588059 DENND2AQ9ULE3 1009 aa13.78□□□□□ -0.2
VPS4B-202ENST00000588059 STXBP5LQ9Y2K9 1186 aa13.78□□□□□ -0.2
VPS4B-202ENST00000588059 PTPRCP08575 1304 aa13.78□□□□□ -0.2
VPS4B-202ENST00000588059 SYN1P17600 705 aa13.77□□□□□ -0.21
VPS4B-202ENST00000588059 MAGEA10P43363 369 aaPredicted RBP13.77□□□□□ -0.21
VPS4B-202ENST00000588059 TRIM32Q13049 653 aa13.77□□□□□ -0.21
VPS4B-202ENST00000588059 PROCA1Q8NCQ7 364 aaPredicted RBP13.77□□□□□ -0.21
VPS4B-202ENST00000588059 NBPF3Q9H094 633 aa13.77□□□□□ -0.21
VPS4B-202ENST00000588059 SIL1Q9H173 461 aa13.77□□□□□ -0.21
VPS4B-202ENST00000588059 MTMR10Q9NXD2 777 aa13.77□□□□□ -0.21
VPS4B-202ENST00000588059 GJD2Q9UKL4 321 aa13.77□□□□□ -0.21
VPS4B-202ENST00000588059 RPTORQ8N122 1335 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 FAM196BA6NMK8 535 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 ZBTB22O15209 634 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 CIAO1O76071 339 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 BTDP43251 543 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 PICALMQ13492 652 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 DZIP1Q86YF9 867 aaKnown RBP13.76□□□□□ -0.21
VPS4B-202ENST00000588059 TDHQ8IZJ6 230 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 ZGPATQ8N5A5 531 aaKnown RBP13.76□□□□□ -0.21
VPS4B-202ENST00000588059 C11orf49Q9H6J7 331 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 CEP126Q9P2H0 1117 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 FBXO3Q9UK99 471 aa13.76□□□□□ -0.21
VPS4B-202ENST00000588059 PFASO15067 1338 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms