RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 METAP2P50579 478 aaKnown RBP eCLIP16.6■□□□□ 0.25
LIG3-205ENST00000585941 RESTQ13127 1097 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 FERMT3Q86UX7 667 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 TBC1D16Q8TBP0 767 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 TBC1D22AQ8WUA7 517 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 NOL10Q9BSC4 688 aaKnown RBP16.6■□□□□ 0.25
LIG3-205ENST00000585941 TMX4Q9H1E5 349 aaPredicted RBP16.6■□□□□ 0.25
LIG3-205ENST00000585941 GDPD2Q9HCC8 539 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 TOMM22Q9NS69 142 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 ARPP21Q9UBL0 812 aaPredicted RBP16.6■□□□□ 0.25
LIG3-205ENST00000585941 NID2Q14112 1375 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 BAG3O95817 575 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 MMP10P09238 476 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 FGRP09769 529 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 SBK1Q52WX2 424 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 SLF2Q8IX21 1173 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 CFAP45Q9UL16 551 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 SLC12A7Q9Y666 1083 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 DTNBO60941 627 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 PPP4CP60510 307 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 WTAPQ15007 396 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 RRP12Q5JTH9 1297 aaKnown RBP16.59■□□□□ 0.25
LIG3-205ENST00000585941 MASTLQ96GX5 879 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 UBAC1Q9BSL1 405 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 GRPEL1Q9HAV7 217 aa16.59■□□□□ 0.25
LIG3-205ENST00000585941 AATFQ9NY61 560 aaKnown RBP eCLIP16.59■□□□□ 0.25
LIG3-205ENST00000585941 ORC3Q9UBD5 711 aaPredicted RBP16.59■□□□□ 0.25
LIG3-205ENST00000585941 C6orf229H3BNL8 230 aa16.58■□□□□ 0.24
LIG3-205ENST00000585941 GADD45BO75293 160 aaPredicted RBP16.58■□□□□ 0.24
LIG3-205ENST00000585941 LETM1O95202 739 aaPredicted RBP16.58■□□□□ 0.24
LIG3-205ENST00000585941 FDPSP14324 419 aaKnown RBP16.58■□□□□ 0.24
LIG3-205ENST00000585941 PPP2R5BQ15173 497 aa16.58■□□□□ 0.24
LIG3-205ENST00000585941 CTR9Q6PD62 1173 aa16.58■□□□□ 0.24
LIG3-205ENST00000585941 DCP1AQ9NPI6 582 aaPredicted RBP16.58■□□□□ 0.24
LIG3-205ENST00000585941 TMEM63CQ9P1W3 806 aa16.58■□□□□ 0.24
LIG3-205ENST00000585941 POLLQ9UGP5 575 aa16.58■□□□□ 0.24
LIG3-205ENST00000585941 MYH2Q9UKX2 1941 aa16.58■□□□□ 0.24
LIG3-205ENST00000585941 CCDC196A0A1B0GTZ2 297 aa16.57■□□□□ 0.24
LIG3-205ENST00000585941 ORC4O43929 436 aa16.57■□□□□ 0.24
LIG3-205ENST00000585941 TACC3Q9Y6A5 838 aa16.57■□□□□ 0.24
LIG3-205ENST00000585941 FAM205AQ6ZU69 1335 aa16.57■□□□□ 0.24
LIG3-205ENST00000585941 GOLGA8AA7E2F4 631 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 USP17L12C9JPN9 530 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 USP17L21D6R901 530 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 AMOTL1Q8IY63 956 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 C8orf76Q96K31 380 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 SPATA32Q96LK8 384 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 ZNF396Q96N95 335 aaPredicted RBP16.56■□□□□ 0.24
LIG3-205ENST00000585941 COA1Q9GZY4 146 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 INCENPQ9NQS7 918 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 RGS17Q9UGC6 210 aaPredicted RBP16.56■□□□□ 0.24
LIG3-205ENST00000585941 SUGT1Q9Y2Z0 365 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 COL11A2P13942 1736 aaPredicted RBP16.56■□□□□ 0.24
LIG3-205ENST00000585941 PLCG2P16885 1265 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 POTEAQ6S8J7 498 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 MICU3Q86XE3 530 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 IQCA1Q86XH1 822 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 MPNDQ8N594 471 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 STK32BQ9NY57 414 aa16.56■□□□□ 0.24
LIG3-205ENST00000585941 MROH7-TTC4A0A0A0MT08 1334 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 STK36Q9NRP7 1315 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 DLEC1Q9Y238 1755 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 XRCC6P12956 609 aaKnown RBP eCLIP16.55■□□□□ 0.24
LIG3-205ENST00000585941 PDE4BQ07343 736 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 SLC15A2Q16348 729 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 CCDC183Q5T5S1 534 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 LRSAM1Q6UWE0 723 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 FBXO18Q8NFZ0 1043 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 NKX2-3Q8TAU0 364 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 WASF1Q92558 559 aa16.55■□□□□ 0.24
LIG3-205ENST00000585941 FAM163AQ96GL9 167 aaPredicted RBP16.55■□□□□ 0.24
LIG3-205ENST00000585941 RBM27Q9P2N5 1060 aaKnown RBP16.55■□□□□ 0.24
LIG3-205ENST00000585941 GOLGA6L4A6NEF3 574 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 IARSP41252 1262 aaKnown RBP16.54■□□□□ 0.24
LIG3-205ENST00000585941 USP5P45974 858 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 STYK1Q6J9G0 422 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 BRAPQ7Z569 592 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 TTC6Q86TZ1 520 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 GAS2L3Q86XJ1 694 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 LEO1Q8WVC0 666 aaPredicted RBP16.54■□□□□ 0.24
LIG3-205ENST00000585941 GPR101Q96P66 508 aaPredicted RBP16.54■□□□□ 0.24
LIG3-205ENST00000585941 CAMKK2Q96RR4 588 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 ZC3H12CQ9C0D7 883 aaKnown RBP16.54■□□□□ 0.24
LIG3-205ENST00000585941 JAG2Q9Y219 1238 aa16.54■□□□□ 0.24
LIG3-205ENST00000585941 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.54■□□□□ 0.24
LIG3-205ENST00000585941 IFNAR1P17181 557 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 ADD1P35611 737 aaKnown RBP16.53■□□□□ 0.24
LIG3-205ENST00000585941 SEC23AQ15436 765 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 RTN1Q16799 776 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 DPP8Q6V1X1 898 aaPredicted RBP16.53■□□□□ 0.24
LIG3-205ENST00000585941 ZSCAN10Q96SZ4 725 aaPredicted RBP16.53■□□□□ 0.24
LIG3-205ENST00000585941 EYA3Q99504 573 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 SENP2Q9HC62 589 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 NAV1Q8NEY1 1877 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 H0YIN7 160 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 RANBP6O60518 1105 aaKnown RBP16.53■□□□□ 0.24
LIG3-205ENST00000585941 CALM1P0DP23 149 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 CALM2P0DP24 149 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 CALM3P0DP25 149 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 CDC27P30260 824 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms