RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 TMEM139Q8IV31 216 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.01□□□□□ -0.17
SHMT1-208ENST00000582352 INTS13Q9NVM9 706 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 DACH1Q9UI36 760 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 UBN2Q6ZU65 1347 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 RIC1Q4ADV7 1423 aa14.01□□□□□ -0.17
SHMT1-208ENST00000582352 CDK11BP21127 795 aaKnown RBP14□□□□□ -0.17
SHMT1-208ENST00000582352 TTF1Q15361 905 aaPredicted RBP14□□□□□ -0.17
SHMT1-208ENST00000582352 ISCA1Q9BUE6 129 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 CALCOCO1Q9P1Z2 691 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 STX10O60499 249 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 IDH1O75874 414 aaKnown RBP14□□□□□ -0.17
SHMT1-208ENST00000582352 TMEM67Q5HYA8 995 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 SPECC1LQ69YQ0 1117 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 DDX17Q92841 729 aaKnown RBP14□□□□□ -0.17
SHMT1-208ENST00000582352 SLC26A6Q9BXS9 759 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 RANBP6O60518 1105 aaKnown RBP14□□□□□ -0.17
SHMT1-208ENST00000582352 CYP2C19P33261 490 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 PDE4BQ07343 736 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 TCIRG1Q13488 830 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 POSTNQ15063 836 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 FOXP4Q8IVH2 680 aaPredicted RBP14□□□□□ -0.17
SHMT1-208ENST00000582352 FAM89AQ96GI7 184 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 MYL10Q9BUA6 226 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 SENP2Q9HC62 589 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 NFE2L3Q9Y4A8 694 aa14□□□□□ -0.17
SHMT1-208ENST00000582352 MAP3K15Q6ZN16 1313 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 ERVV-2B6SEH9 535 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 BMP6P22004 513 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 PPP2R3AQ06190 1150 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 SSRP1Q08945 709 aaKnown RBP13.99□□□□□ -0.17
SHMT1-208ENST00000582352 SAFBQ15424 915 aaKnown RBP eCLIP13.99□□□□□ -0.17
SHMT1-208ENST00000582352 NOSTRINQ8IVI9 506 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 WASF1Q92558 559 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 STK36Q9NRP7 1315 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 AKAP11Q9UKA4 1901 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 FOXN1O15353 648 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 SEC31AO94979 1220 aaKnown RBP13.99□□□□□ -0.17
SHMT1-208ENST00000582352 PCCAP05165 728 aaPredicted RBP13.99□□□□□ -0.17
SHMT1-208ENST00000582352 TBX2Q13207 712 aaPredicted RBP13.99□□□□□ -0.17
SHMT1-208ENST00000582352 NTRK3Q16288 839 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 SPECC1Q5M775 1068 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 WDR24Q96S15 920 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 LY9Q9HBG7 655 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 MAN1B1Q9UKM7 699 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 TBC1D2BQ9UPU7 963 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 SLC12A7Q9Y666 1083 aa13.99□□□□□ -0.17
SHMT1-208ENST00000582352 PAPPAQ13219 1627 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 ATP8B1O43520 1251 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 TOGARAM2Q6ZUX3 1019 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 SGMS1Q86VZ5 419 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 ELOA2Q8IYF1 753 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-208ENST00000582352 GPR161Q8N6U8 529 aaKnown RBP13.98□□□□□ -0.17
SHMT1-208ENST00000582352 MLKLQ8NB16 471 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 NKX2-3Q8TAU0 364 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 ZCRB1Q8TBF4 217 aaKnown RBP13.98□□□□□ -0.17
SHMT1-208ENST00000582352 SMARCE1Q969G3 411 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 TNS3Q68CZ2 1445 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 POLR3GO15318 223 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-208ENST00000582352 ATF3P18847 181 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 ADKP55263 362 aaKnown RBP13.98□□□□□ -0.17
SHMT1-208ENST00000582352 UBE3CQ15386 1083 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 LDHAL6AQ6ZMR3 332 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 KIF6Q6ZMV9 814 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 IGDCC4Q8TDY8 1250 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 AIDAQ96BJ3 306 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 PLA2G12BQ9BX93 195 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 MRFAP1Q9Y605 127 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 ZNF532Q9HCE3 1301 aa13.98□□□□□ -0.17
SHMT1-208ENST00000582352 MAP3K9P80192 1104 aa13.97□□□□□ -0.17
SHMT1-208ENST00000582352 NUTM2AQ8IVF1 878 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 STK11IPQ8N1F8 1099 aa13.97□□□□□ -0.17
SHMT1-208ENST00000582352 TC2NQ8N9U0 490 aa13.97□□□□□ -0.17
SHMT1-208ENST00000582352 IFIT3O14879 490 aaKnown RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 POLR2DO15514 142 aaKnown RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 FMNL1O95466 1100 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 ZNF18P17022 549 aa13.97□□□□□ -0.17
SHMT1-208ENST00000582352 MDM2Q00987 491 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 FMR1Q06787 632 aaKnown RBP eCLIP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 CC2D1AQ6P1N0 951 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 TRMT44Q8IYL2 757 aaKnown RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 ZBTB38Q8NAP3 1195 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 PIH1D3Q9NQM4 214 aaKnown RBP13.97□□□□□ -0.17
SHMT1-208ENST00000582352 CNNM1Q9NRU3 951 aa13.97□□□□□ -0.17
SHMT1-208ENST00000582352 RAI14Q9P0K7 980 aa13.97□□□□□ -0.17
SHMT1-208ENST00000582352 MMP1P03956 469 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 CSF1RP07333 972 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 PDE6AP16499 860 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 ZNF827Q17R98 1081 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 DIS3L2Q8IYB7 885 aaKnown RBP13.96□□□□□ -0.17
SHMT1-208ENST00000582352 TRIM22Q8IYM9 498 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 ENOX1Q8TC92 643 aaKnown RBP13.96□□□□□ -0.17
SHMT1-208ENST00000582352 GOLGA1Q92805 767 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 ARFGAP3Q9NP61 516 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 FAM217BQ9NTX9 383 aaPredicted RBP13.96□□□□□ -0.17
SHMT1-208ENST00000582352 BTBD18B2RXH4 712 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 UBE2Q2LH0YL09 131 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 LIFRP42702 1097 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 TRIM28Q13263 835 aaKnown RBP13.96□□□□□ -0.17
SHMT1-208ENST00000582352 TRIML1Q8N9V2 468 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms