RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ECE1P42892 770 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 USP5P45974 858 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 IREB2P48200 963 aaKnown RBP11.52□□□□□ -0.57
CCDC40-214ENST00000575431 HUNKP57058 714 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 PICALMQ13492 652 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 DLK2Q6UY11 383 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 SH3RF3Q8TEJ3 882 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-214ENST00000575431 CCDC102AQ96A19 550 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 AIDAQ96BJ3 306 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 DDRGK1Q96HY6 314 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 OSBPL5Q9H0X9 879 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-214ENST00000575431 TAOK2Q9UL54 1235 aa11.52□□□□□ -0.57
CCDC40-214ENST00000575431 HIP1O00291 1037 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 GNAT2P19087 354 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 PDE4AP27815 886 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 DYNLL1P63167 89 aaKnown RBP11.51□□□□□ -0.57
CCDC40-214ENST00000575431 RGMBQ6NW40 437 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 TTC6Q86TZ1 520 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 FOXP4Q8IVH2 680 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-214ENST00000575431 ANKRD13AQ8IZ07 590 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 TGFBRAP1Q8WUH2 860 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 CSRNP1Q96S65 589 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 ZNF341Q9BYN7 854 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 ATP8A2Q9NTI2 1148 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 PI4KBQ9UBF8 816 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 ANGEL1Q9UNK9 670 aaKnown RBP11.51□□□□□ -0.57
CCDC40-214ENST00000575431 FOCADQ5VW36 1801 aa11.51□□□□□ -0.57
CCDC40-214ENST00000575431 AK9Q5TCS8 1911 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 TBC1D12O60347 775 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 USP2O75604 605 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-214ENST00000575431 HLA-DOAP06340 250 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 MAP3K10Q02779 954 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 LDLRAD1Q5T700 205 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 TTC22Q5TAA0 569 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 MAPKAPK5Q8IW41 473 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 RILPL2Q969X0 211 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 DDX4Q9NQI0 724 aaKnown RBP11.5□□□□□ -0.57
CCDC40-214ENST00000575431 HELLSQ9NRZ9 838 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 HERC5Q9UII4 1024 aaKnown RBP11.5□□□□□ -0.57
CCDC40-214ENST00000575431 FLT1P17948 1338 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 SSC5DA1L4H1 1573 aa11.5□□□□□ -0.57
CCDC40-214ENST00000575431 CDK5RAP2Q96SN8 1893 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 DDTLA6NHG4 134 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-214ENST00000575431 UBE2Q2LH0YL09 131 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 MBD4O95243 580 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 MAP3K9P80192 1104 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 PRKG1Q13976 671 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 ZMYM1Q5SVZ6 1142 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 GIMAP6Q6P9H5 292 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 ZFPM1Q8IX07 1006 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 AMOTL1Q8IY63 956 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 LCORLQ8N3X6 602 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 KLRG1Q96E93 195 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 PUS7LQ9H0K6 701 aaKnown RBP11.49□□□□□ -0.57
CCDC40-214ENST00000575431 ARMT1Q9H993 441 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 CSADQ9Y600 493 aa11.49□□□□□ -0.57
CCDC40-214ENST00000575431 SDSP20132 328 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 MAP2K2P36507 400 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 ZNF157P51786 506 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 MFAP1P55081 439 aaKnown RBP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 NOGQ13253 232 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 PAXIP1Q6ZW49 1069 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 SH3BP5LQ7L8J4 393 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 CDAN1Q8IWY9 1227 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 REM2Q8IYK8 340 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 DNAJC5GQ8N7S2 189 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 OSBP2Q969R2 916 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 SLC10A4Q96EP9 437 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 STRBPQ96SI9 672 aaKnown RBP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 MKRN1Q9UHC7 482 aaKnown RBP11.48□□□□□ -0.57
CCDC40-214ENST00000575431 ZNF112Q9UJU3 913 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 SLC4A4Q9Y6R1 1079 aa11.48□□□□□ -0.57
CCDC40-214ENST00000575431 GPAA1O43292 621 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 HTRA3P83110 453 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 MCMDC2Q4G0Z9 681 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 MIGA2Q7L4E1 593 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 CRACR2BQ8N4Y2 399 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-214ENST00000575431 CAPNS2Q96L46 248 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 TRIM34Q9BYJ4 488 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 NACAP1Q9BZK3 213 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 EHD4Q9H223 541 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.47□□□□□ -0.57
CCDC40-214ENST00000575431 DCP1AQ9NPI6 582 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-214ENST00000575431 DIAPH3Q9NSV4 1193 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 MCM9Q9NXL9 1143 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 PALD1Q9ULE6 856 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 MYH1P12882 1939 aa11.47□□□□□ -0.57
CCDC40-214ENST00000575431 WDR33Q9C0J8 1336 aaKnown RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 PATL2C9JE40 543 aaKnown RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 CHGBP05060 677 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 POLR3DP05423 398 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 ZBTB48P10074 688 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 SLFNL1Q499Z3 407 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 CYP4F22Q6NT55 531 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 MOB2Q70IA6 237 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 METTL16Q86W50 562 aaKnown RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 SDR42E1Q8WUS8 393 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 RUFY2Q8WXA3 655 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms