RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 CAMK4Q16566 473 aa12.21□□□□□ -0.46
USP43-205ENST00000574408 SLC27A3Q5K4L6 730 aa12.21□□□□□ -0.46
USP43-205ENST00000574408 CACNA1SQ13698 1873 aa12.21□□□□□ -0.46
USP43-205ENST00000574408 CYP2D7A0A087X1C5 515 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 SERPINB2P05120 415 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 PHKBQ93100 1093 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 AIFM3Q96NN9 605 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 CHD4Q14839 1912 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 POLR3DP05423 398 aaPredicted RBP12.2□□□□□ -0.46
USP43-205ENST00000574408 SYNE3Q6ZMZ3 975 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 AATFQ9NY61 560 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP43-205ENST00000574408 TIAM2Q8IVF5 1701 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 PDS5AQ29RF7 1337 aaKnown RBP12.2□□□□□ -0.46
USP43-205ENST00000574408 ERICH2A1L162 156 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 ST5P78524 1137 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 WTAPQ15007 396 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 ALG1Q9BT22 464 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 RCOR1Q9UKL0 485 aa12.2□□□□□ -0.46
USP43-205ENST00000574408 GPR101Q96P66 508 aaPredicted RBP12.19□□□□□ -0.46
USP43-205ENST00000574408 PRDM10Q9NQV6 1147 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 DDX19AQ9NUU7 478 aaKnown RBP12.19□□□□□ -0.46
USP43-205ENST00000574408 IARSP41252 1262 aaKnown RBP12.19□□□□□ -0.46
USP43-205ENST00000574408 MAP3K11Q16584 847 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 ATL3Q6DD88 541 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 UBAC1Q9BSL1 405 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 BRIP1Q9BX63 1249 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 TNMDQ9H2S6 317 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 LEMD3Q9Y2U8 911 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 XDHP47989 1333 aa12.19□□□□□ -0.46
USP43-205ENST00000574408 NR1I2O75469 434 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 DZIP1Q86YF9 867 aaKnown RBP12.18□□□□□ -0.46
USP43-205ENST00000574408 ESR2Q92731 530 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 FUCA2Q9BTY2 467 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 FAM217BQ9NTX9 383 aaPredicted RBP12.18□□□□□ -0.46
USP43-205ENST00000574408 UBR3Q6ZT12 1888 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 IRS2Q9Y4H2 1338 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 NTRK3Q16288 839 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 TXNRD1Q16881 649 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 CKAP2LQ8IYA6 745 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 ANAPC4Q9UJX5 808 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 USP17L12C9JPN9 530 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 USP17L21D6R901 530 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 RANBP6O60518 1105 aaKnown RBP12.18□□□□□ -0.46
USP43-205ENST00000574408 PRDM1O75626 825 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 ME1P48163 572 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 PDLIM2Q96JY6 352 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 SLC26A6Q9BXS9 759 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 CRNKL1Q9BZJ0 848 aaKnown RBP12.18□□□□□ -0.46
USP43-205ENST00000574408 MYH13Q9UKX3 1938 aa12.18□□□□□ -0.46
USP43-205ENST00000574408 KIF28PB7ZC32 967 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 CCDC192P0DO97 292 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 KIF23Q02241 960 aaPredicted RBP12.17□□□□□ -0.46
USP43-205ENST00000574408 NUP133Q8WUM0 1156 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 CLSTN2Q9H4D0 955 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 BAZ2AQ9UIF9 1905 aaKnown RBP12.17□□□□□ -0.46
USP43-205ENST00000574408 DDR1Q08345 913 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 RTN1Q16799 776 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 SPTY2D1Q68D10 685 aaPredicted RBP12.17□□□□□ -0.46
USP43-205ENST00000574408 KRT40Q6A162 431 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 BRAPQ7Z569 592 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 GPSM2P81274 684 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 CRY2Q49AN0 593 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 MYSM1Q5VVJ2 828 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 CTR9Q6PD62 1173 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 CCAR1Q8IX12 1150 aaKnown RBP12.17□□□□□ -0.46
USP43-205ENST00000574408 TNKSO95271 1327 aa12.17□□□□□ -0.46
USP43-205ENST00000574408 UBE2Q2LH0YL09 131 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 UFL1O94874 794 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 SSRP1Q08945 709 aaKnown RBP12.16□□□□□ -0.46
USP43-205ENST00000574408 STK38Q15208 465 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 ZNF804AQ7Z570 1209 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 ZNF654Q8IZM8 581 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 PROM2Q8N271 834 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 TMTC2Q8N394 836 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 CCDC82Q8N4S0 544 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 RBM17Q96I25 401 aaKnown RBP12.16□□□□□ -0.46
USP43-205ENST00000574408 DCP1AQ9NPI6 582 aaPredicted RBP12.16□□□□□ -0.46
USP43-205ENST00000574408 BRWD3Q6RI45 1802 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 MYH15Q9Y2K3 1946 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 GNL2Q13823 731 aaKnown RBP12.16□□□□□ -0.46
USP43-205ENST00000574408 SF3A1Q15459 793 aaKnown RBP12.16□□□□□ -0.46
USP43-205ENST00000574408 CCDC73Q6ZRK6 1079 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 WDR66Q8TBY9 1149 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 MTA3Q9BTC8 594 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 RTEL1Q9NZ71 1219 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 CLIC4Q9Y696 253 aa12.16□□□□□ -0.46
USP43-205ENST00000574408 LDHBP07195 334 aaKnown RBP12.15□□□□□ -0.46
USP43-205ENST00000574408 EVX2Q03828 476 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 TRIM29Q14134 588 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 UVSSAQ2YD98 709 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 TDRD7Q8NHU6 1098 aaKnown RBP12.15□□□□□ -0.46
USP43-205ENST00000574408 USP25Q9UHP3 1055 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 IFNAR1P17181 557 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 TYRO3Q06418 890 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 CMTR1Q8N1G2 835 aaKnown RBP12.15□□□□□ -0.46
USP43-205ENST00000574408 FSIP1Q8NA03 581 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 GOLPH3LQ9H4A5 285 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 POLRMTO00411 1230 aaKnown RBP12.15□□□□□ -0.46
USP43-205ENST00000574408 SLC4A8Q2Y0W8 1093 aa12.15□□□□□ -0.46
USP43-205ENST00000574408 KLHL34Q8N239 644 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms