RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 SARM1Q6SZW1 724 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.01□□□□□ -0.17
CIITA-209ENST00000573309 GPR108Q9NPR9 543 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 U3KPZ7 1027 aaPredicted RBP14.01□□□□□ -0.17
CIITA-209ENST00000573309 ZNF213O14771 459 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 FOXP2O15409 715 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 PRDX5P30044 214 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 EN1Q05925 392 aaPredicted RBP14.01□□□□□ -0.17
CIITA-209ENST00000573309 RPGRQ92834 1020 aaKnown RBP14.01□□□□□ -0.17
CIITA-209ENST00000573309 MRFAP1L1Q96HT8 127 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 MROH5Q6ZUA9 1318 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 GOLGA6L19H0YKK7 550 aa14□□□□□ -0.17
CIITA-209ENST00000573309 C6orf229H3BNL8 230 aa14□□□□□ -0.17
CIITA-209ENST00000573309 PDCP20941 246 aa14□□□□□ -0.17
CIITA-209ENST00000573309 APPBP2Q92624 585 aa14□□□□□ -0.17
CIITA-209ENST00000573309 SLC4A4Q9Y6R1 1079 aa14□□□□□ -0.17
CIITA-209ENST00000573309 GYS1P13807 737 aa14□□□□□ -0.17
CIITA-209ENST00000573309 PLA2G4AP47712 749 aa14□□□□□ -0.17
CIITA-209ENST00000573309 CLCN6P51797 869 aa14□□□□□ -0.17
CIITA-209ENST00000573309 PRR5LQ6MZQ0 368 aa14□□□□□ -0.17
CIITA-209ENST00000573309 RALYLQ86SE5 291 aaKnown RBP14□□□□□ -0.17
CIITA-209ENST00000573309 PPP1R1BQ9UD71 204 aaPredicted RBP14□□□□□ -0.17
CIITA-209ENST00000573309 LAMB4A4D0S4 1761 aa14□□□□□ -0.17
CIITA-209ENST00000573309 UBE2Q2LH0YL09 131 aa14□□□□□ -0.17
CIITA-209ENST00000573309 ADD2P35612 726 aa14□□□□□ -0.17
CIITA-209ENST00000573309 AATFQ9NY61 560 aaKnown RBP eCLIP14□□□□□ -0.17
CIITA-209ENST00000573309 MAP3K12Q12852 859 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 ANKRD1Q15327 319 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 DIXDC1Q155Q3 683 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 CAVIN4Q5BKX8 364 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 CLEC4GQ6UXB4 293 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 DEFB132Q7Z7B7 95 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 FAM84BQ96KN1 310 aaPredicted RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 COL22A1Q8NFW1 1626 aaPredicted RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 FGFR2P21802 821 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 SLC20A2Q08357 652 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 BMS1Q14692 1282 aaKnown RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 GRIK5Q16478 980 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 IMMTQ16891 758 aaKnown RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 DHX40Q8IX18 779 aaKnown RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 ERCC4Q92889 916 aaPredicted RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 ZNF622Q969S3 477 aaKnown RBP eCLIP13.99□□□□□ -0.17
CIITA-209ENST00000573309 NAPBQ9H115 298 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 HELLSQ9NRZ9 838 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.99□□□□□ -0.17
CIITA-209ENST00000573309 NEMFO60524 1076 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 MICU3Q86XE3 530 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 TBC1D10CQ8IV04 446 aa13.99□□□□□ -0.17
CIITA-209ENST00000573309 TJP1Q07157 1748 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 DDR1Q08345 913 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 E4F1Q66K89 784 aaPredicted RBP13.98□□□□□ -0.17
CIITA-209ENST00000573309 MXD3Q9BW11 206 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 TRIM34Q9BYJ4 488 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 FTOQ9C0B1 505 aaKnown RBP eCLIP13.98□□□□□ -0.17
CIITA-209ENST00000573309 NUP98P52948 1817 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 hCG_1642624A0A1W2PR95 340 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 PNMA6AP0CW24 399 aaPredicted RBP13.98□□□□□ -0.17
CIITA-209ENST00000573309 NFXL1Q6ZNB6 911 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 CNTNAP4Q9C0A0 1308 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 CARMIL3Q8ND23 1372 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 NRAPQ86VF7 1730 aa13.98□□□□□ -0.17
CIITA-209ENST00000573309 PRC1O43663 620 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 SCRN1Q12765 414 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 POTEAQ6S8J7 498 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 SYT10Q6XYQ8 523 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 NBPF11Q86T75 865 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 L2HGDHQ9H9P8 463 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 RXRBP28702 533 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 COL23A1Q86Y22 540 aaPredicted RBP13.97□□□□□ -0.17
CIITA-209ENST00000573309 GOLPH3LQ9H4A5 285 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 PLEKHG2Q9H7P9 1386 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 KLF18A0A0U1RQI7 1052 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 SNW1Q13573 536 aaKnown RBP13.97□□□□□ -0.17
CIITA-209ENST00000573309 CCDC93Q567U6 631 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 NEK11Q8NG66 645 aa13.97□□□□□ -0.17
CIITA-209ENST00000573309 FEZ2Q9UHY8 353 aaPredicted RBP13.97□□□□□ -0.17
CIITA-209ENST00000573309 UFL1O94874 794 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 RESTQ13127 1097 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 DOK7Q18PE1 504 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 AIFM3Q96NN9 605 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 NUP188Q5SRE5 1749 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 POLR3GO15318 223 aaPredicted RBP13.96□□□□□ -0.17
CIITA-209ENST00000573309 UQCRFS1P1P0C7P4 283 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 ARHGAP29Q52LW3 1261 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 DHX32Q7L7V1 743 aaKnown RBP13.96□□□□□ -0.17
CIITA-209ENST00000573309 NUP133Q8WUM0 1156 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 PPP1R13BQ96KQ4 1090 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 NYXQ9GZU5 481 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 EPB41L4AQ9HCS5 686 aaPredicted RBP13.96□□□□□ -0.17
CIITA-209ENST00000573309 BSDC1Q9NW68 430 aaPredicted RBP13.96□□□□□ -0.17
CIITA-209ENST00000573309 PAPPAQ13219 1627 aa13.96□□□□□ -0.17
CIITA-209ENST00000573309 GOLGA8BA8MQT2 603 aa13.96□□□□□ -0.18
CIITA-209ENST00000573309 BECN2A8MW95 431 aa13.96□□□□□ -0.18
CIITA-209ENST00000573309 MMP10P09238 476 aa13.96□□□□□ -0.18
CIITA-209ENST00000573309 HIBADHP31937 336 aaKnown RBP13.96□□□□□ -0.18
CIITA-209ENST00000573309 RAD51AP2Q09MP3 1159 aa13.96□□□□□ -0.18
CIITA-209ENST00000573309 EZH2Q15910 746 aaKnown RBP13.96□□□□□ -0.18
CIITA-209ENST00000573309 ZNF804BA4D1E1 1349 aa13.95□□□□□ -0.18
CIITA-209ENST00000573309 TRDNQ13061 729 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms