RNA–Protein interactions for RNA: ENST00000570380.5

CTDNEP1-202, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 506 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-202ENST00000570380 NFIAQ12857 509 aa13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 TRIM32Q13049 653 aa13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 FAM109BQ6ICB4 259 aaPredicted RBP13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 GADL1Q6ZQY3 521 aa13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 C11orf49Q9H6J7 331 aa13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 SUGT1Q9Y2Z0 365 aa13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 AFG3L2Q9Y4W6 797 aa13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 COL2A1P02458 1487 aaPredicted RBP13.22□□□□□ -0.29
CTDNEP1-202ENST00000570380 PFASO15067 1338 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 MROH5Q6ZUA9 1318 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 DNAH12Q6ZR08 3092 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 GRM8O00222 908 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 HMGCRP04035 888 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 CAVIN4Q5BKX8 364 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 CDC42EP5Q6NZY7 148 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 SCYL3Q8IZE3 742 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 ANKRD13CQ8N6S4 541 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 SMCR8Q8TEV9 937 aaPredicted RBP13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 FAM161BQ96MY7 647 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 FAM198AQ9UFP1 575 aa13.21□□□□□ -0.29
CTDNEP1-202ENST00000570380 MYH2Q9UKX2 1941 aa13.21□□□□□ -0.3
CTDNEP1-202ENST00000570380 ATRNL1Q5VV63 1379 aa13.2□□□□□ -0.3
CTDNEP1-202ENST00000570380 PTPRAP18433 802 aa13.2□□□□□ -0.3
CTDNEP1-202ENST00000570380 ZFPM1Q8IX07 1006 aa13.2□□□□□ -0.3
CTDNEP1-202ENST00000570380 HMX1Q9NP08 348 aaPredicted RBP13.2□□□□□ -0.3
CTDNEP1-202ENST00000570380 OGDHLQ9ULD0 1010 aa13.2□□□□□ -0.3
CTDNEP1-202ENST00000570380 CDH23Q9H251 3354 aa13.2□□□□□ -0.3
CTDNEP1-202ENST00000570380 MUC3AQ02505 3323 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 FRMPD3Q5JV73 1810 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 MDM2Q00987 491 aaPredicted RBP13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 LRRC24Q50LG9 513 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 VGLL2Q8N8G2 317 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 KAZALD1Q96I82 304 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 PICK1Q9NRD5 415 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 GJD2Q9UKL4 321 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 DAGLAQ9Y4D2 1042 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 LOC285556D6RIA3 1793 aa13.19□□□□□ -0.3
CTDNEP1-202ENST00000570380 ATAD5Q96QE3 1844 aa13.18□□□□□ -0.3
CTDNEP1-202ENST00000570380 DIXDC1Q155Q3 683 aa13.18□□□□□ -0.3
CTDNEP1-202ENST00000570380 FAM110CQ1W6H9 321 aa13.18□□□□□ -0.3
CTDNEP1-202ENST00000570380 TRIM75PA6NK02 468 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 PDE8BO95263 885 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 SLURP2P0DP57 97 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 COL6A1P12109 1028 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 METTL24Q5JXM2 366 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 TREML2Q5T2D2 321 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 TRIB2Q92519 343 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 SUCLG2Q96I99 432 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 USP40Q9NVE5 1235 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 C9orf78Q9NZ63 289 aaPredicted RBP13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 AGTPBP1Q9UPW5 1226 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 MAST2Q6P0Q8 1798 aa13.17□□□□□ -0.3
CTDNEP1-202ENST00000570380 TTC28Q96AY4 2481 aa13.16□□□□□ -0.3
CTDNEP1-202ENST00000570380 VAMP4O75379 141 aa13.16□□□□□ -0.3
CTDNEP1-202ENST00000570380 LRRC26Q2I0M4 334 aa13.16□□□□□ -0.3
CTDNEP1-202ENST00000570380 MAP3K21Q5TCX8 1036 aa13.16□□□□□ -0.3
CTDNEP1-202ENST00000570380 CCDC84Q86UT8 332 aaPredicted RBP13.16□□□□□ -0.3
CTDNEP1-202ENST00000570380 LTBP2Q14767 1821 aa13.16□□□□□ -0.3
CTDNEP1-202ENST00000570380 FGFR2P21802 821 aa13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 MAP3K10Q02779 954 aa13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 ZNF697Q5TEC3 545 aa13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 SH3BP5LQ7L8J4 393 aa13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 WWC1Q8IX03 1113 aa13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 WDR66Q8TBY9 1149 aa13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 CDX2Q99626 313 aaPredicted RBP13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 LRRFIP2Q9Y608 721 aaKnown RBP13.15□□□□□ -0.3
CTDNEP1-202ENST00000570380 CTNND1O60716 968 aaKnown RBP13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 NBPF7P0C2Y1 421 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 PRKAR2AP13861 404 aaKnown RBP13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 PRDX5P30044 214 aa13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 GCLCP48506 637 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 RGS3P49796 1198 aa13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 DDX10Q13206 875 aaKnown RBP13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 MAFAQ8NHW3 353 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 PNMA3Q9UL41 463 aa13.14□□□□□ -0.31
CTDNEP1-202ENST00000570380 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 DDTLA6NHG4 134 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 ENTPD3O75355 529 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 ALDH1L1O75891 902 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 CYP2B6P20813 491 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 COL9A1P20849 921 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 CCDC27Q2M243 656 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 RABL6Q3YEC7 729 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 KLHDC4Q8TBB5 520 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 IDI2Q9BXS1 227 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 SPINK5Q9NQ38 1064 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 FANCIQ9NVI1 1328 aa13.13□□□□□ -0.31
CTDNEP1-202ENST00000570380 RFX7Q2KHR2 1363 aa13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 IFIT1P09914 478 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 ZEB1P37275 1124 aaPredicted RBP13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 PUM3Q15397 648 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 LHX8Q68G74 356 aa13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 ZSCAN29Q8IWY8 852 aaPredicted RBP13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 PROCA1Q8NCQ7 364 aaPredicted RBP13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 SEMA6BQ9H3T3 888 aa13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 BICC1Q9H694 974 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 IL16Q14005 1332 aa13.12□□□□□ -0.31
CTDNEP1-202ENST00000570380 LDHBP07195 334 aaKnown RBP13.11□□□□□ -0.31
CTDNEP1-202ENST00000570380 CACNB2Q08289 660 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms