RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 RGS3P49796 1198 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 SREBF2Q12772 1141 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 TCP10Q12799 353 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 NFIAQ12857 509 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 HDAC1Q13547 482 aaPredicted RBP11.93□□□□□ -0.5
CLN6-209ENST00000569336 ZSCAN29Q8IWY8 852 aaPredicted RBP11.93□□□□□ -0.5
CLN6-209ENST00000569336 ZNF384Q8TF68 577 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 GCC1Q96CN9 775 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 DNAJC2Q99543 621 aaKnown RBP11.93□□□□□ -0.5
CLN6-209ENST00000569336 ZNF341Q9BYN7 854 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 PIH1D3Q9NQM4 214 aaKnown RBP11.93□□□□□ -0.5
CLN6-209ENST00000569336 FAM198AQ9UFP1 575 aa11.93□□□□□ -0.5
CLN6-209ENST00000569336 USP2O75604 605 aaPredicted RBP11.92□□□□□ -0.5
CLN6-209ENST00000569336 WDHD1O75717 1129 aaPredicted RBP11.92□□□□□ -0.5
CLN6-209ENST00000569336 TEX11Q8IYF3 940 aa11.92□□□□□ -0.5
CLN6-209ENST00000569336 SLC10A4Q96EP9 437 aa11.92□□□□□ -0.5
CLN6-209ENST00000569336 CSRNP1Q96S65 589 aa11.92□□□□□ -0.5
CLN6-209ENST00000569336 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLN6-209ENST00000569336 ECHDC1Q9NTX5 307 aa11.92□□□□□ -0.5
CLN6-209ENST00000569336 PAG1Q9NWQ8 432 aa11.92□□□□□ -0.5
CLN6-209ENST00000569336 SUPT16HQ9Y5B9 1047 aaKnown RBP11.92□□□□□ -0.5
CLN6-209ENST00000569336 LAMA4Q16363 1823 aa11.92□□□□□ -0.5
CLN6-209ENST00000569336 GOLIM4O00461 696 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 SMARCA5O60264 1052 aaPredicted RBP11.91□□□□□ -0.5
CLN6-209ENST00000569336 CYP7A1P22680 504 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 RHBDL3P58872 404 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 KIF23Q02241 960 aaPredicted RBP11.91□□□□□ -0.5
CLN6-209ENST00000569336 PICALMQ13492 652 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 CDAN1Q8IWY9 1227 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 MAGEB6Q8N7X4 407 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLN6-209ENST00000569336 WRNIP1Q96S55 665 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 HAUS7Q99871 368 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 SAGE1Q9NXZ1 904 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 AATFQ9NY61 560 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLN6-209ENST00000569336 FZD1Q9UP38 647 aa11.91□□□□□ -0.5
CLN6-209ENST00000569336 TTC41PQ6P2S7 1318 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 MANSC4A6NHS7 340 aaPredicted RBP11.9□□□□□ -0.5
CLN6-209ENST00000569336 ERC2O15083 957 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 PPP4CP60510 307 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 MAP3K9P80192 1104 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 VGLL4Q14135 290 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 SPRYD7Q5W111 196 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 SH3RF3Q8TEJ3 882 aaPredicted RBP11.9□□□□□ -0.5
CLN6-209ENST00000569336 WNK4Q96J92 1243 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 CLMNQ96JQ2 1002 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 RWDD1Q9H446 243 aaPredicted RBP11.9□□□□□ -0.5
CLN6-209ENST00000569336 ANTXR1Q9H6X2 564 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 NDUFB9Q9Y6M9 179 aa11.9□□□□□ -0.5
CLN6-209ENST00000569336 PARP14Q460N5 1801 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 INHBEP58166 350 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 SLC9C2Q5TAH2 1124 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 ZSCAN25Q6NSZ9 544 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 ADGRA1Q86SQ6 560 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 OSBPL5Q9H0X9 879 aaPredicted RBP11.89□□□□□ -0.51
CLN6-209ENST00000569336 DHX36Q9H2U1 1008 aaKnown RBP11.89□□□□□ -0.51
CLN6-209ENST00000569336 BOLA2Q9H3K6 86 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 ELP3Q9H9T3 547 aa11.89□□□□□ -0.51
CLN6-209ENST00000569336 DDX4Q9NQI0 724 aaKnown RBP11.89□□□□□ -0.51
CLN6-209ENST00000569336 FLT1P17948 1338 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 SPDYE5A6NIY4 337 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 ALDH1A1P00352 501 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 PDE6AP16499 860 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 MX1P20591 662 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 LRRFIP1Q32MZ4 808 aaKnown RBP11.88□□□□□ -0.51
CLN6-209ENST00000569336 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.88□□□□□ -0.51
CLN6-209ENST00000569336 EXOC6Q8TAG9 804 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 OPTNQ96CV9 577 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 ZIC5Q96T25 663 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.88□□□□□ -0.51
CLN6-209ENST00000569336 CENPFP49454 3210 aa11.88□□□□□ -0.51
CLN6-209ENST00000569336 GREB1LQ9C091 1923 aaPredicted RBP11.88□□□□□ -0.51
CLN6-209ENST00000569336 MAGEB6P1A0A0J9YX57 407 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 DDTLA6NHG4 134 aaPredicted RBP11.87□□□□□ -0.51
CLN6-209ENST00000569336 GLRX3O76003 335 aaKnown RBP11.87□□□□□ -0.51
CLN6-209ENST00000569336 HLA-DOAP06340 250 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 USP5P45974 858 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 TM4SF4P48230 202 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 MKRN3Q13064 507 aaKnown RBP11.87□□□□□ -0.51
CLN6-209ENST00000569336 NOL9Q5SY16 702 aaKnown RBP11.87□□□□□ -0.51
CLN6-209ENST00000569336 OTUD7BQ6GQQ9 843 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 MIGA2Q7L4E1 593 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 ERO1BQ86YB8 467 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 MIGA1Q8NAN2 632 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 TGFBRAP1Q8WUH2 860 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 OTUD5Q96G74 571 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 TRIM34Q9BYJ4 488 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 CRNKL1Q9BZJ0 848 aaKnown RBP11.87□□□□□ -0.51
CLN6-209ENST00000569336 HERC5Q9UII4 1024 aaKnown RBP11.87□□□□□ -0.51
CLN6-209ENST00000569336 TSKSQ9UJT2 592 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 SNCAIPQ9Y6H5 919 aa11.87□□□□□ -0.51
CLN6-209ENST00000569336 ZNF532Q9HCE3 1301 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 DOCK3Q8IZD9 2030 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 HTTP42858 3142 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 TBC1D12O60347 775 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 ADD2P35612 726 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 GTF2A2P52657 109 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 PPIL2Q13356 520 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 ANKRD45Q5TZF3 282 aa11.86□□□□□ -0.51
CLN6-209ENST00000569336 SH3BP5LQ7L8J4 393 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms