RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 ZSCAN29Q8IWY8 852 aaPredicted RBP26.46■■□□□ 1.83
CLN3-234ENST00000568472 OSBPL5Q9H0X9 879 aaPredicted RBP26.46■■□□□ 1.83
CLN3-234ENST00000568472 COL2A1P02458 1487 aaPredicted RBP26.46■■□□□ 1.83
CLN3-234ENST00000568472 ATRNL1Q5VV63 1379 aa26.46■■□□□ 1.83
CLN3-234ENST00000568472 MYO5AQ9Y4I1 1855 aaKnown RBP26.45■■□□□ 1.83
CLN3-234ENST00000568472 RASSF10A6NK89 507 aa26.45■■□□□ 1.82
CLN3-234ENST00000568472 USP5P45974 858 aa26.45■■□□□ 1.82
CLN3-234ENST00000568472 HUNKP57058 714 aa26.45■■□□□ 1.82
CLN3-234ENST00000568472 ZFPM1Q8IX07 1006 aa26.45■■□□□ 1.82
CLN3-234ENST00000568472 RILPL2Q969X0 211 aa26.45■■□□□ 1.82
CLN3-234ENST00000568472 IREB2P48200 963 aaKnown RBP26.44■■□□□ 1.82
CLN3-234ENST00000568472 DEFB115Q30KQ5 88 aa26.44■■□□□ 1.82
CLN3-234ENST00000568472 TTC22Q5TAA0 569 aa26.44■■□□□ 1.82
CLN3-234ENST00000568472 CSRNP1Q96S65 589 aa26.44■■□□□ 1.82
CLN3-234ENST00000568472 FLT1P17948 1338 aa26.43■■□□□ 1.82
CLN3-234ENST00000568472 MBD4O95243 580 aa26.43■■□□□ 1.82
CLN3-234ENST00000568472 ZMYM1Q5SVZ6 1142 aa26.43■■□□□ 1.82
CLN3-234ENST00000568472 LCORLQ8N3X6 602 aa26.43■■□□□ 1.82
CLN3-234ENST00000568472 PUS7LQ9H0K6 701 aaKnown RBP26.43■■□□□ 1.82
CLN3-234ENST00000568472 ATP8A2Q9NTI2 1148 aa26.43■■□□□ 1.82
CLN3-234ENST00000568472 ANGEL1Q9UNK9 670 aaKnown RBP26.43■■□□□ 1.82
CLN3-234ENST00000568472 HIP1O00291 1037 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 GNAT2P19087 354 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 MAPKAPK5Q8IW41 473 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 CDAN1Q8IWY9 1227 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 OSBP2Q969R2 916 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 DDRGK1Q96HY6 314 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 ARMT1Q9H993 441 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 PAPPA2Q9BXP8 1791 aa26.42■■□□□ 1.82
CLN3-234ENST00000568472 USP2O75604 605 aaPredicted RBP26.41■■□□□ 1.82
CLN3-234ENST00000568472 MAP3K10Q02779 954 aa26.41■■□□□ 1.82
CLN3-234ENST00000568472 SLFNL1Q499Z3 407 aa26.41■■□□□ 1.82
CLN3-234ENST00000568472 LDLRAD1Q5T700 205 aa26.41■■□□□ 1.82
CLN3-234ENST00000568472 SH3BP5LQ7L8J4 393 aa26.41■■□□□ 1.82
CLN3-234ENST00000568472 STRBPQ96SI9 672 aaKnown RBP26.41■■□□□ 1.82
CLN3-234ENST00000568472 PI4KBQ9UBF8 816 aa26.41■■□□□ 1.82
CLN3-234ENST00000568472 SSC5DA1L4H1 1573 aa26.41■■□□□ 1.82
CLN3-234ENST00000568472 DDTLA6NHG4 134 aaPredicted RBP26.4■■□□□ 1.82
CLN3-234ENST00000568472 UBE2Q2LH0YL09 131 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 TBC1D12O60347 775 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 CHGBP05060 677 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 ECE1P42892 770 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 HTRA3P83110 453 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 PRKG1Q13976 671 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 ZNF341Q9BYN7 854 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 HELLSQ9NRZ9 838 aa26.4■■□□□ 1.82
CLN3-234ENST00000568472 HLA-DOAP06340 250 aa26.39■■□□□ 1.82
CLN3-234ENST00000568472 RGMBQ6NW40 437 aa26.39■■□□□ 1.82
CLN3-234ENST00000568472 TTC6Q86TZ1 520 aa26.39■■□□□ 1.82
CLN3-234ENST00000568472 FOXP4Q8IVH2 680 aaPredicted RBP26.39■■□□□ 1.82
CLN3-234ENST00000568472 ANKRD13AQ8IZ07 590 aa26.39■■□□□ 1.82
CLN3-234ENST00000568472 CCDC102AQ96A19 550 aa26.39■■□□□ 1.82
CLN3-234ENST00000568472 MKRN1Q9UHC7 482 aaKnown RBP26.39■■□□□ 1.82
CLN3-234ENST00000568472 SDSP20132 328 aa26.38■■□□□ 1.81
CLN3-234ENST00000568472 GIMAP6Q6P9H5 292 aa26.38■■□□□ 1.81
CLN3-234ENST00000568472 MOB2Q70IA6 237 aa26.38■■□□□ 1.81
CLN3-234ENST00000568472 KLRG1Q96E93 195 aa26.38■■□□□ 1.81
CLN3-234ENST00000568472 HERC5Q9UII4 1024 aaKnown RBP26.38■■□□□ 1.81
CLN3-234ENST00000568472 TAOK2Q9UL54 1235 aa26.38■■□□□ 1.81
CLN3-234ENST00000568472 SLC4A4Q9Y6R1 1079 aa26.38■■□□□ 1.81
CLN3-234ENST00000568472 GPAA1O43292 621 aa26.37■■□□□ 1.81
CLN3-234ENST00000568472 GSPT1P15170 499 aaKnown RBP26.37■■□□□ 1.81
CLN3-234ENST00000568472 MAP3K9P80192 1104 aa26.37■■□□□ 1.81
CLN3-234ENST00000568472 MIGA2Q7L4E1 593 aa26.37■■□□□ 1.81
CLN3-234ENST00000568472 DNAJC5GQ8N7S2 189 aa26.37■■□□□ 1.81
CLN3-234ENST00000568472 DCP1AQ9NPI6 582 aaPredicted RBP26.37■■□□□ 1.81
CLN3-234ENST00000568472 ZNF112Q9UJU3 913 aa26.37■■□□□ 1.81
CLN3-234ENST00000568472 ZNF157P51786 506 aaPredicted RBP26.36■■□□□ 1.81
CLN3-234ENST00000568472 MCMDC2Q4G0Z9 681 aa26.36■■□□□ 1.81
CLN3-234ENST00000568472 METTL16Q86W50 562 aaKnown RBP26.36■■□□□ 1.81
CLN3-234ENST00000568472 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.36■■□□□ 1.81
CLN3-234ENST00000568472 PALD1Q9ULE6 856 aa26.36■■□□□ 1.81
CLN3-234ENST00000568472 MYH7P12883 1935 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 MFAP1P55081 439 aaKnown RBP26.35■■□□□ 1.81
CLN3-234ENST00000568472 AMOTL1Q8IY63 956 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 SDR42E1Q8WUS8 393 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 SLC10A4Q96EP9 437 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 DIAPH3Q9NSV4 1193 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 MCM9Q9NXL9 1143 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 SAP30BPQ9UHR5 308 aaKnown RBP26.35■■□□□ 1.81
CLN3-234ENST00000568472 CSADQ9Y600 493 aa26.35■■□□□ 1.81
CLN3-234ENST00000568472 M0R2C6 588 aa26.34■■□□□ 1.81
CLN3-234ENST00000568472 POLR3DP05423 398 aaPredicted RBP26.34■■□□□ 1.81
CLN3-234ENST00000568472 PAXIP1Q6ZW49 1069 aaPredicted RBP26.34■■□□□ 1.81
CLN3-234ENST00000568472 CAPNS2Q96L46 248 aa26.34■■□□□ 1.81
CLN3-234ENST00000568472 WRNIP1Q96S55 665 aa26.34■■□□□ 1.81
CLN3-234ENST00000568472 TRIM34Q9BYJ4 488 aa26.34■■□□□ 1.81
CLN3-234ENST00000568472 NACAP1Q9BZK3 213 aa26.34■■□□□ 1.81
CLN3-234ENST00000568472 EHD4Q9H223 541 aa26.34■■□□□ 1.81
CLN3-234ENST00000568472 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.34■■□□□ 1.81
CLN3-234ENST00000568472 PATL2C9JE40 543 aaKnown RBP26.33■■□□□ 1.81
CLN3-234ENST00000568472 PRKAB2O43741 272 aa26.33■■□□□ 1.81
CLN3-234ENST00000568472 SEC62Q99442 399 aaKnown RBP26.33■■□□□ 1.81
CLN3-234ENST00000568472 FZD1Q9UP38 647 aa26.33■■□□□ 1.81
CLN3-234ENST00000568472 VEGFBP49765 207 aa26.32■■□□□ 1.8
CLN3-234ENST00000568472 BMP2KLQ5H9B9 411 aa26.32■■□□□ 1.8
CLN3-234ENST00000568472 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.32■■□□□ 1.8
CLN3-234ENST00000568472 CRACR2BQ8N4Y2 399 aaPredicted RBP26.32■■□□□ 1.8
CLN3-234ENST00000568472 WDR33Q9C0J8 1336 aaKnown RBP26.32■■□□□ 1.8
CLN3-234ENST00000568472 GSG1L2A8MUP6 293 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms