RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MINDY4BA8MYZ0 360 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 ONECUT3O60422 494 aaPredicted RBP23.6■■□□□ 1.37
CLN3-230ENST00000568076 RFC4P35249 363 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 TRAPPC3LQ5T215 181 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 MEX3CQ5U5Q3 659 aaKnown RBP23.6■■□□□ 1.37
CLN3-230ENST00000568076 KRT40Q6A162 431 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 FAM196AQ6ZSG2 479 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 SLC51AQ86UW1 340 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 RNF41Q9H4P4 317 aaPredicted RBP23.6■■□□□ 1.37
CLN3-230ENST00000568076 LRRC4BQ9NT99 713 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 AFF2P51816 1311 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 HIBADHP31937 336 aaKnown RBP23.6■■□□□ 1.37
CLN3-230ENST00000568076 IARSP41252 1262 aaKnown RBP23.6■■□□□ 1.37
CLN3-230ENST00000568076 TXNRD3Q86VQ6 643 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 FSIP1Q8NA03 581 aa23.6■■□□□ 1.37
CLN3-230ENST00000568076 NSUN4Q96CB9 384 aaKnown RBP23.6■■□□□ 1.37
CLN3-230ENST00000568076 IRS2Q9Y4H2 1338 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 YEATS4O95619 227 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 FAM160A1Q05DH4 1040 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 NFIXQ14938 502 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 WTAPQ15007 396 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 CCDC73Q6ZRK6 1079 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 LUZP1Q86V48 1076 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 MTA3Q9BTC8 594 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 CBX8Q9HC52 389 aa23.59■■□□□ 1.37
CLN3-230ENST00000568076 PDS5AQ29RF7 1337 aaKnown RBP23.59■■□□□ 1.37
CLN3-230ENST00000568076 PTMAP06454 111 aaKnown RBP23.58■■□□□ 1.37
CLN3-230ENST00000568076 ADALQ6DHV7 355 aa23.58■■□□□ 1.37
CLN3-230ENST00000568076 SASS6Q6UVJ0 657 aa23.58■■□□□ 1.37
CLN3-230ENST00000568076 MECOMQ03112 1051 aa23.58■■□□□ 1.36
CLN3-230ENST00000568076 SART3Q15020 963 aaKnown RBP23.58■■□□□ 1.36
CLN3-230ENST00000568076 STK38Q15208 465 aa23.58■■□□□ 1.36
CLN3-230ENST00000568076 SEPT12Q8IYM1 358 aa23.58■■□□□ 1.36
CLN3-230ENST00000568076 BRIP1Q9BX63 1249 aa23.58■■□□□ 1.36
CLN3-230ENST00000568076 CYP2D7A0A087X1C5 515 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 A0A1W2PQ27 194 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 A0A1W2PQ64 194 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 A0A1W2PQD8 194 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 ZNF500O60304 480 aaPredicted RBP23.57■■□□□ 1.36
CLN3-230ENST00000568076 IFNAR1P17181 557 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 PLCB2Q00722 1185 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 MPNDQ8N594 471 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 KCNG4Q8TDN1 519 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 MRPS27Q92552 414 aaKnown RBP23.57■■□□□ 1.36
CLN3-230ENST00000568076 SLC26A6Q9BXS9 759 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 STK36Q9NRP7 1315 aa23.57■■□□□ 1.36
CLN3-230ENST00000568076 SPTLC2O15270 562 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 FMNL1O95466 1100 aaPredicted RBP23.56■■□□□ 1.36
CLN3-230ENST00000568076 ANO1Q5XXA6 986 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 SYNE3Q6ZMZ3 975 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 FMR1NBQ8N0W7 255 aaPredicted RBP23.56■■□□□ 1.36
CLN3-230ENST00000568076 TAOK2Q9UL54 1235 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 CTAGE5O15320 804 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 PRDX5P30044 214 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 SSRP1Q08945 709 aaKnown RBP23.56■■□□□ 1.36
CLN3-230ENST00000568076 DNAJC25Q9H1X3 360 aa23.56■■□□□ 1.36
CLN3-230ENST00000568076 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.56■■□□□ 1.36
CLN3-230ENST00000568076 DUOX1Q9NRD9 1551 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 MYH13Q9UKX3 1938 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 NPHP1O15259 732 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 GUCY1A2P33402 732 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 CHAF1AQ13111 956 aaPredicted RBP23.55■■□□□ 1.36
CLN3-230ENST00000568076 SEC23AQ15436 765 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 RTN1Q16799 776 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 ESR2Q92731 530 aa23.55■■□□□ 1.36
CLN3-230ENST00000568076 BAZ2AQ9UIF9 1905 aaKnown RBP23.55■■□□□ 1.36
CLN3-230ENST00000568076 A0A1B0GVL5 298 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 ERICH2A1L162 156 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 KINO60870 393 aaKnown RBP23.54■■□□□ 1.36
CLN3-230ENST00000568076 SF3A1Q15459 793 aaKnown RBP23.54■■□□□ 1.36
CLN3-230ENST00000568076 CTR9Q6PD62 1173 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 NBPF11Q86T75 865 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 TMTC2Q8N394 836 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 BCL11BQ9C0K0 894 aaPredicted RBP23.54■■□□□ 1.36
CLN3-230ENST00000568076 TNKSO95271 1327 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 U2AF2P26368 475 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-230ENST00000568076 NDUFA8P51970 172 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 ZNF654Q8IZM8 581 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 UBAC1Q9BSL1 405 aa23.54■■□□□ 1.36
CLN3-230ENST00000568076 EVX2Q03828 476 aa23.53■■□□□ 1.36
CLN3-230ENST00000568076 GRAPQ13588 217 aa23.53■■□□□ 1.36
CLN3-230ENST00000568076 AXDND1Q5T1B0 1012 aaPredicted RBP23.53■■□□□ 1.36
CLN3-230ENST00000568076 GRAPLQ8TC17 118 aaPredicted RBP23.53■■□□□ 1.36
CLN3-230ENST00000568076 JAG2Q9Y219 1238 aa23.53■■□□□ 1.36
CLN3-230ENST00000568076 FGRP09769 529 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 HSPA1LP34931 641 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 ZNF165P49910 485 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 CMTR1Q8N1G2 835 aaKnown RBP23.52■■□□□ 1.36
CLN3-230ENST00000568076 CNBD1Q8NA66 436 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 AATFQ9NY61 560 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLN3-230ENST00000568076 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.52■■□□□ 1.36
CLN3-230ENST00000568076 RCAN1P53805 252 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 SLC39A14Q15043 492 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 FANCBQ8NB91 859 aa23.52■■□□□ 1.36
CLN3-230ENST00000568076 TDRD7Q8NHU6 1098 aaKnown RBP23.52■■□□□ 1.36
CLN3-230ENST00000568076 ZNF830Q96NB3 372 aaPredicted RBP23.52■■□□□ 1.36
CLN3-230ENST00000568076 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLN3-230ENST00000568076 TRPC5Q9UL62 973 aaPredicted RBP23.52■■□□□ 1.36
CLN3-230ENST00000568076 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.51■■□□□ 1.35
CLN3-230ENST00000568076 USP17L12C9JPN9 530 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms