RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SNAPC2Q13487 334 aa25.4■■□□□ 1.66
CLN3-219ENST00000565778 HSP90AB4PQ58FF6 505 aa25.4■■□□□ 1.66
CLN3-219ENST00000565778 ZNF512BQ96KM6 892 aaPredicted RBP25.4■■□□□ 1.66
CLN3-219ENST00000565778 NOL10Q9BSC4 688 aaKnown RBP25.4■■□□□ 1.66
CLN3-219ENST00000565778 DDX4Q9NQI0 724 aaKnown RBP25.4■■□□□ 1.66
CLN3-219ENST00000565778 DBNLQ9UJU6 430 aaKnown RBP25.4■■□□□ 1.66
CLN3-219ENST00000565778 ZAP70P43403 619 aa25.39■■□□□ 1.66
CLN3-219ENST00000565778 RHBDL3P58872 404 aa25.39■■□□□ 1.66
CLN3-219ENST00000565778 PPIL2Q13356 520 aa25.39■■□□□ 1.66
CLN3-219ENST00000565778 SH3BP5LQ7L8J4 393 aa25.39■■□□□ 1.66
CLN3-219ENST00000565778 ZBTB40Q9NUA8 1239 aa25.39■■□□□ 1.66
CLN3-219ENST00000565778 TLR7Q9NYK1 1049 aaKnown RBP25.39■■□□□ 1.66
CLN3-219ENST00000565778 AK9Q5TCS8 1911 aa25.39■■□□□ 1.65
CLN3-219ENST00000565778 OTOFQ9HC10 1997 aa25.38■■□□□ 1.65
CLN3-219ENST00000565778 DDTLA6NHG4 134 aaPredicted RBP25.38■■□□□ 1.65
CLN3-219ENST00000565778 MAP4K4O95819 1239 aaPredicted RBP25.38■■□□□ 1.65
CLN3-219ENST00000565778 CYP2E1P05181 493 aaPredicted RBP25.38■■□□□ 1.65
CLN3-219ENST00000565778 TAF1CQ15572 869 aaPredicted RBP25.38■■□□□ 1.65
CLN3-219ENST00000565778 NAA16Q6N069 864 aaPredicted RBP25.38■■□□□ 1.65
CLN3-219ENST00000565778 HMMRO75330 724 aa25.37■■□□□ 1.65
CLN3-219ENST00000565778 AACSQ86V21 672 aa25.37■■□□□ 1.65
CLN3-219ENST00000565778 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.37■■□□□ 1.65
CLN3-219ENST00000565778 ZFYVE28Q9HCC9 887 aa25.37■■□□□ 1.65
CLN3-219ENST00000565778 APBB1O00213 710 aa25.36■■□□□ 1.65
CLN3-219ENST00000565778 BAG3O95817 575 aa25.36■■□□□ 1.65
CLN3-219ENST00000565778 FAM43AQ8N2R8 423 aa25.36■■□□□ 1.65
CLN3-219ENST00000565778 IL1RAPL2Q9NP60 686 aa25.36■■□□□ 1.65
CLN3-219ENST00000565778 PHF20L1A8MW92 1017 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 NPM3O75607 178 aaKnown RBP25.35■■□□□ 1.65
CLN3-219ENST00000565778 SP3Q02447 781 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 NOL9Q5SY16 702 aaKnown RBP25.35■■□□□ 1.65
CLN3-219ENST00000565778 TEX11Q8IYF3 940 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 RHPN1Q8TCX5 695 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 ERO1AQ96HE7 468 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 BCL11AQ9H165 835 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 HPS5Q9UPZ3 1129 aa25.35■■□□□ 1.65
CLN3-219ENST00000565778 BTBD19C9JJ37 291 aa25.34■■□□□ 1.65
CLN3-219ENST00000565778 MAP3K10Q02779 954 aa25.34■■□□□ 1.65
CLN3-219ENST00000565778 PDE3AQ14432 1141 aa25.34■■□□□ 1.65
CLN3-219ENST00000565778 FBXO46Q6PJ61 603 aaPredicted RBP25.34■■□□□ 1.65
CLN3-219ENST00000565778 PIH1D3Q9NQM4 214 aaKnown RBP25.34■■□□□ 1.65
CLN3-219ENST00000565778 PICK1Q9NRD5 415 aa25.34■■□□□ 1.65
CLN3-219ENST00000565778 TRIM17Q9Y577 477 aa25.34■■□□□ 1.65
CLN3-219ENST00000565778 RFX7Q2KHR2 1363 aa25.33■■□□□ 1.65
CLN3-219ENST00000565778 SLURP2P0DP57 97 aa25.33■■□□□ 1.65
CLN3-219ENST00000565778 C20orf194Q5TEA3 1177 aa25.33■■□□□ 1.65
CLN3-219ENST00000565778 SIRT2Q8IXJ6 389 aa25.33■■□□□ 1.65
CLN3-219ENST00000565778 CD99L2Q8TCZ2 262 aa25.33■■□□□ 1.65
CLN3-219ENST00000565778 SH3RF3Q8TEJ3 882 aaPredicted RBP25.33■■□□□ 1.65
CLN3-219ENST00000565778 AATFQ9NY61 560 aaKnown RBP eCLIP25.33■■□□□ 1.65
CLN3-219ENST00000565778 PLCG2P16885 1265 aa25.32■■□□□ 1.64
CLN3-219ENST00000565778 SCYL3Q8IZE3 742 aa25.32■■□□□ 1.64
CLN3-219ENST00000565778 CLASRPQ8N2M8 674 aaKnown RBP25.32■■□□□ 1.64
CLN3-219ENST00000565778 KIF1BPQ96EK5 621 aa25.32■■□□□ 1.64
CLN3-219ENST00000565778 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.32■■□□□ 1.64
CLN3-219ENST00000565778 ATRNL1Q5VV63 1379 aa25.31■■□□□ 1.64
CLN3-219ENST00000565778 IGSF3O75054 1194 aa25.31■■□□□ 1.64
CLN3-219ENST00000565778 IDH1O75874 414 aaKnown RBP25.31■■□□□ 1.64
CLN3-219ENST00000565778 RGS19P49795 217 aa25.31■■□□□ 1.64
CLN3-219ENST00000565778 PPP4CP60510 307 aa25.31■■□□□ 1.64
CLN3-219ENST00000565778 OSBPL5Q9H0X9 879 aaPredicted RBP25.31■■□□□ 1.64
CLN3-219ENST00000565778 ZCCHC17Q9NP64 241 aaKnown RBP25.31■■□□□ 1.64
CLN3-219ENST00000565778 KCNH4Q9UQ05 1017 aa25.31■■□□□ 1.64
CLN3-219ENST00000565778 ZHX2Q9Y6X8 837 aa25.31■■□□□ 1.64
CLN3-219ENST00000565778 TBC1D12O60347 775 aa25.3■■□□□ 1.64
CLN3-219ENST00000565778 CTNND1O60716 968 aaKnown RBP25.3■■□□□ 1.64
CLN3-219ENST00000565778 CYP7A1P22680 504 aa25.3■■□□□ 1.64
CLN3-219ENST00000565778 OTOP1Q7RTM1 612 aa25.3■■□□□ 1.64
CLN3-219ENST00000565778 NDUFB9Q9Y6M9 179 aa25.3■■□□□ 1.64
CLN3-219ENST00000565778 LAMB1P07942 1786 aa25.29■■□□□ 1.64
CLN3-219ENST00000565778 CXCL11O14625 94 aa25.29■■□□□ 1.64
CLN3-219ENST00000565778 RAB11FIP3O75154 756 aa25.29■■□□□ 1.64
CLN3-219ENST00000565778 IFIT2P09913 472 aaKnown RBP25.29■■□□□ 1.64
CLN3-219ENST00000565778 PTPRAP18433 802 aa25.29■■□□□ 1.64
CLN3-219ENST00000565778 MLLT1Q03111 559 aaPredicted RBP25.29■■□□□ 1.64
CLN3-219ENST00000565778 EFCC1Q9HA90 598 aa25.29■■□□□ 1.64
CLN3-219ENST00000565778 FAM196BA6NMK8 535 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 TLR2O60603 784 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 SOX10P56693 466 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 ARHGEF6Q15052 776 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 ANKRD23Q86SG2 305 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 ADGRA1Q86SQ6 560 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 TGFBRAP1Q8WUH2 860 aa25.28■■□□□ 1.64
CLN3-219ENST00000565778 PDHXO00330 501 aa25.27■■□□□ 1.64
CLN3-219ENST00000565778 ANTXR1Q9H6X2 564 aa25.27■■□□□ 1.64
CLN3-219ENST00000565778 MAP3K12Q12852 859 aa25.26■■□□□ 1.63
CLN3-219ENST00000565778 MAPKAPK5Q8IW41 473 aa25.26■■□□□ 1.63
CLN3-219ENST00000565778 MAGEB6Q8N7X4 407 aa25.26■■□□□ 1.63
CLN3-219ENST00000565778 DHX36Q9H2U1 1008 aaKnown RBP25.26■■□□□ 1.63
CLN3-219ENST00000565778 PI4KBQ9UBF8 816 aa25.26■■□□□ 1.63
CLN3-219ENST00000565778 AFG3L2Q9Y4W6 797 aa25.26■■□□□ 1.63
CLN3-219ENST00000565778 DYNLL1P63167 89 aaKnown RBP25.25■■□□□ 1.63
CLN3-219ENST00000565778 KIF22Q14807 665 aa25.24■■□□□ 1.63
CLN3-219ENST00000565778 TTF1Q15361 905 aaPredicted RBP25.24■■□□□ 1.63
CLN3-219ENST00000565778 FASTKD5Q7L8L6 764 aaKnown RBP25.24■■□□□ 1.63
CLN3-219ENST00000565778 HERC5Q9UII4 1024 aaKnown RBP25.24■■□□□ 1.63
CLN3-219ENST00000565778 PTPN22Q9Y2R2 807 aa25.24■■□□□ 1.63
CLN3-219ENST00000565778 MOGSQ13724 837 aa25.23■■□□□ 1.63
CLN3-219ENST00000565778 GADL1Q6ZQY3 521 aa25.23■■□□□ 1.63
CLN3-219ENST00000565778 MIGA1Q8NAN2 632 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms