RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 RNF186Q9NXI6 227 aa16.31■□□□□ 0.2
CLK3-216ENST00000564468 MYH7P12883 1935 aa16.3■□□□□ 0.2
CLK3-216ENST00000564468 MANSC4A6NHS7 340 aaPredicted RBP16.3■□□□□ 0.2
CLK3-216ENST00000564468 IDH1O75874 414 aaKnown RBP16.3■□□□□ 0.2
CLK3-216ENST00000564468 ZSCAN29Q8IWY8 852 aaPredicted RBP16.3■□□□□ 0.2
CLK3-216ENST00000564468 CDAN1Q8IWY9 1227 aa16.3■□□□□ 0.2
CLK3-216ENST00000564468 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLK3-216ENST00000564468 FOCADQ5VW36 1801 aa16.3■□□□□ 0.2
CLK3-216ENST00000564468 WDHD1O75717 1129 aaPredicted RBP16.29■□□□□ 0.2
CLK3-216ENST00000564468 TM4SF4P48230 202 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 SOX10P56693 466 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 RHBDL3P58872 404 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 PPP4CP60510 307 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 PICALMQ13492 652 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 CTU1Q7Z7A3 348 aaKnown RBP16.29■□□□□ 0.2
CLK3-216ENST00000564468 WNK4Q96J92 1243 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 CLMNQ96JQ2 1002 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 PIH1D3Q9NQM4 214 aaKnown RBP16.29■□□□□ 0.2
CLK3-216ENST00000564468 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.29■□□□□ 0.2
CLK3-216ENST00000564468 PCDHB15Q9Y5E8 787 aa16.29■□□□□ 0.2
CLK3-216ENST00000564468 RFX7Q2KHR2 1363 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 ATP5JP18859 108 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 CYP7A1P22680 504 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 MKRN3Q13064 507 aaKnown RBP16.28■□□□□ 0.2
CLK3-216ENST00000564468 PKN2Q16513 984 aaKnown RBP16.28■□□□□ 0.2
CLK3-216ENST00000564468 PRPF38BQ5VTL8 546 aaKnown RBP16.28■□□□□ 0.2
CLK3-216ENST00000564468 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.28■□□□□ 0.2
CLK3-216ENST00000564468 TEX11Q8IYF3 940 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 GPATCH3Q96I76 525 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 WRNIP1Q96S55 665 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 ELP3Q9H9T3 547 aa16.28■□□□□ 0.2
CLK3-216ENST00000564468 ZBTB47Q9UFB7 747 aaPredicted RBP16.28■□□□□ 0.2
CLK3-216ENST00000564468 MYH1P12882 1939 aa16.27■□□□□ 0.2
CLK3-216ENST00000564468 ALDH1A1P00352 501 aa16.27■□□□□ 0.2
CLK3-216ENST00000564468 VGLL4Q14135 290 aa16.27■□□□□ 0.2
CLK3-216ENST00000564468 MIGA2Q7L4E1 593 aa16.27■□□□□ 0.2
CLK3-216ENST00000564468 AATFQ9NY61 560 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLK3-216ENST00000564468 COL2A1P02458 1487 aaPredicted RBP16.27■□□□□ 0.19
CLK3-216ENST00000564468 SMARCA5O60264 1052 aaPredicted RBP16.26■□□□□ 0.19
CLK3-216ENST00000564468 OTUD7BQ6GQQ9 843 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 ERO1BQ86YB8 467 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 ZFPM1Q8IX07 1006 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 MAGEB6Q8N7X4 407 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 OPTNQ96CV9 577 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 DNAJC2Q99543 621 aaKnown RBP16.26■□□□□ 0.19
CLK3-216ENST00000564468 BOLA2Q9H3K6 86 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 ANTXR1Q9H6X2 564 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 DDX4Q9NQI0 724 aaKnown RBP16.26■□□□□ 0.19
CLK3-216ENST00000564468 ZNF112Q9UJU3 913 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 NDUFB9Q9Y6M9 179 aa16.26■□□□□ 0.19
CLK3-216ENST00000564468 GOLIM4O00461 696 aa16.25■□□□□ 0.19
CLK3-216ENST00000564468 SH3RF3Q8TEJ3 882 aaPredicted RBP16.25■□□□□ 0.19
CLK3-216ENST00000564468 OSBPL5Q9H0X9 879 aaPredicted RBP16.25■□□□□ 0.19
CLK3-216ENST00000564468 DHX36Q9H2U1 1008 aaKnown RBP16.25■□□□□ 0.19
CLK3-216ENST00000564468 ECHDC1Q9NTX5 307 aa16.25■□□□□ 0.19
CLK3-216ENST00000564468 PAG1Q9NWQ8 432 aa16.25■□□□□ 0.19
CLK3-216ENST00000564468 ATRNL1Q5VV63 1379 aa16.25■□□□□ 0.19
CLK3-216ENST00000564468 DDTLA6NHG4 134 aaPredicted RBP16.24■□□□□ 0.19
CLK3-216ENST00000564468 SPDYE5A6NIY4 337 aa16.24■□□□□ 0.19
CLK3-216ENST00000564468 TBC1D12O60347 775 aa16.24■□□□□ 0.19
CLK3-216ENST00000564468 MAP3K10Q02779 954 aa16.24■□□□□ 0.19
CLK3-216ENST00000564468 HDAC1Q13547 482 aaPredicted RBP16.24■□□□□ 0.19
CLK3-216ENST00000564468 ZKSCAN4Q969J2 545 aaPredicted RBP16.24■□□□□ 0.19
CLK3-216ENST00000564468 GCC1Q96CN9 775 aa16.24■□□□□ 0.19
CLK3-216ENST00000564468 HAUS7Q99871 368 aa16.24■□□□□ 0.19
CLK3-216ENST00000564468 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.24■□□□□ 0.192e-6■□□□□ 11.2
CLK3-216ENST00000564468 SUPT16HQ9Y5B9 1047 aaKnown RBP16.24■□□□□ 0.19
CLK3-216ENST00000564468 SNCAIPQ9Y6H5 919 aa16.24■□□□□ 0.19
CLK3-216ENST00000564468 DOCK1Q14185 1865 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 GTF2A2P52657 109 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 PPATQ06203 517 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 NOL9Q5SY16 702 aaKnown RBP16.23■□□□□ 0.19
CLK3-216ENST00000564468 SLC9C2Q5TAH2 1124 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 SH3BP5LQ7L8J4 393 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 ADGRA1Q86SQ6 560 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 TGFBRAP1Q8WUH2 860 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 OTUD5Q96G74 571 aa16.23■□□□□ 0.19
CLK3-216ENST00000564468 ATAD5Q96QE3 1844 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 TESPA1A2RU30 521 aaPredicted RBP16.22■□□□□ 0.19
CLK3-216ENST00000564468 INPP5BP32019 993 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 GJA5P36382 358 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 PPIL2Q13356 520 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 ZSCAN25Q6NSZ9 544 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 IFNL1Q8IU54 200 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 CFHR5Q9BXR6 569 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 RWDD1Q9H446 243 aaPredicted RBP16.22■□□□□ 0.19
CLK3-216ENST00000564468 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-216ENST00000564468 PI4KBQ9UBF8 816 aa16.22■□□□□ 0.19
CLK3-216ENST00000564468 HERC5Q9UII4 1024 aaKnown RBP16.22■□□□□ 0.19
CLK3-216ENST00000564468 MAGEB6P1A0A0J9YX57 407 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 ERC2O15083 957 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 CTNND1O60716 968 aaKnown RBP16.21■□□□□ 0.19
CLK3-216ENST00000564468 HLA-DOAP06340 250 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 PDE6AP16499 860 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 USP5P45974 858 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 MAPKAPK5Q8IW41 473 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 MIGA1Q8NAN2 632 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 PICK1Q9NRD5 415 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 HPS5Q9UPZ3 1129 aa16.21■□□□□ 0.19
CLK3-216ENST00000564468 FLT1P17948 1338 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms