RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 FLT3LGP49771 235 aa13.12□□□□□ -0.31
SF3B3-204ENST00000563739 DCAF15Q66K64 600 aa13.12□□□□□ -0.31
SF3B3-204ENST00000563739 PRRT2Q7Z6L0 340 aaPredicted RBP13.12□□□□□ -0.31
SF3B3-204ENST00000563739 ADCY3O60266 1144 aa13.11□□□□□ -0.31
SF3B3-204ENST00000563739 Q7L0L9 218 aa13.11□□□□□ -0.31
SF3B3-204ENST00000563739 CCDC84Q86UT8 332 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-204ENST00000563739 CDH23Q9H251 3354 aa13.11□□□□□ -0.31
SF3B3-204ENST00000563739 DNAH12Q6ZR08 3092 aa13.11□□□□□ -0.31
SF3B3-204ENST00000563739 FCGRTP55899 365 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 MAP3K10Q02779 954 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 TCP10Q12799 353 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 IRF5Q13568 498 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 DEFB118Q96PH6 123 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 PARK7Q99497 189 aaKnown RBP13.1□□□□□ -0.31
SF3B3-204ENST00000563739 SUGT1Q9Y2Z0 365 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 PRUNE2Q8WUY3 3088 aa13.1□□□□□ -0.31
SF3B3-204ENST00000563739 LTBP2Q14767 1821 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 CXCL11O14625 94 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 PTPRAP18433 802 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 UBXN2AP68543 259 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 TRIM32Q13049 653 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 METTL24Q5JXM2 366 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 PXYLP1Q8TE99 480 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 PAWRQ96IZ0 340 aaKnown RBP13.09□□□□□ -0.31
SF3B3-204ENST00000563739 CDK5RAP2Q96SN8 1893 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 SRCIN1Q9C0H9 1055 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 DDX4Q9NQI0 724 aaKnown RBP13.09□□□□□ -0.31
SF3B3-204ENST00000563739 TMOD2Q9NZR1 351 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 AFG3L2Q9Y4W6 797 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 NR2E3Q9Y5X4 410 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 MAST3O60307 1309 aa13.09□□□□□ -0.31
SF3B3-204ENST00000563739 WDHD1O75717 1129 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-204ENST00000563739 HOXD10P28358 340 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 BMP8BP34820 402 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 ATG9AQ7Z3C6 839 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 SCYL3Q8IZE3 742 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 HOOK2Q96ED9 719 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 C9orf78Q9NZ63 289 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-204ENST00000563739 GAKO14976 1311 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 PFASO15067 1338 aa13.08□□□□□ -0.32
SF3B3-204ENST00000563739 DDTLA6NHG4 134 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-204ENST00000563739 EVI5O60447 810 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 TREML2Q5T2D2 321 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 SLC4A10Q6U841 1118 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 WDR63Q8IWG1 891 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 ZNF384Q8TF68 577 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.07□□□□□ -0.32
SF3B3-204ENST00000563739 MTMR10Q9NXD2 777 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 BIN2Q9UBW5 565 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-204ENST00000563739 ZMYND8Q9ULU4 1186 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-204ENST00000563739 SLC45A1Q9Y2W3 748 aa13.07□□□□□ -0.32
SF3B3-204ENST00000563739 RGS3P49796 1198 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 RRP1BQ14684 758 aaKnown RBP13.06□□□□□ -0.32
SF3B3-204ENST00000563739 PUM3Q15397 648 aaKnown RBP13.06□□□□□ -0.32
SF3B3-204ENST00000563739 CAVIN4Q5BKX8 364 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 VPS37DQ86XT2 251 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 C7orf61Q8IZ16 206 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 IDI2Q9BXS1 227 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 ZHX2Q9Y6X8 837 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 SALL1Q9NSC2 1324 aa13.06□□□□□ -0.32
SF3B3-204ENST00000563739 MUC3AQ02505 3323 aa13.05□□□□□ -0.32
SF3B3-204ENST00000563739 FOCADQ5VW36 1801 aa13.05□□□□□ -0.32
SF3B3-204ENST00000563739 MAGEA10P43363 369 aaPredicted RBP13.05□□□□□ -0.32
SF3B3-204ENST00000563739 LRIT3Q3SXY7 679 aa13.05□□□□□ -0.32
SF3B3-204ENST00000563739 GPR153Q6NV75 609 aa13.05□□□□□ -0.32
SF3B3-204ENST00000563739 COL25A1Q9BXS0 654 aaPredicted RBP13.05□□□□□ -0.32
SF3B3-204ENST00000563739 USP44Q9H0E7 712 aa13.05□□□□□ -0.32
SF3B3-204ENST00000563739 GJD2Q9UKL4 321 aa13.05□□□□□ -0.32
SF3B3-204ENST00000563739 TNPO2O14787 897 aaKnown RBP13.04□□□□□ -0.32
SF3B3-204ENST00000563739 ZBTB22O15209 634 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 PEX10O60683 326 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 FRAT2O75474 233 aaPredicted RBP13.04□□□□□ -0.32
SF3B3-204ENST00000563739 SYN1P17600 705 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 GADL1Q6ZQY3 521 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 DEFB123Q8N688 67 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 ANKRD13CQ8N6S4 541 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 WDR66Q8TBY9 1149 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 USP40Q9NVE5 1235 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 AGTPBP1Q9UPW5 1226 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 STXBP5LQ9Y2K9 1186 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 SALL2Q9Y467 1007 aaPredicted RBP13.04□□□□□ -0.32
SF3B3-204ENST00000563739 ZNF521Q96K83 1311 aa13.04□□□□□ -0.32
SF3B3-204ENST00000563739 FAM196BA6NMK8 535 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 EYA2O00167 538 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 TFRCP02786 760 aaKnown RBP13.03□□□□□ -0.32
SF3B3-204ENST00000563739 PHKA1P46020 1223 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 RHBDL3P58872 404 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 FAM110CQ1W6H9 321 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 MAP3K21Q5TCX8 1036 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 POTEEQ6S8J3 1075 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 MRPL50Q8N5N7 158 aaKnown RBP13.03□□□□□ -0.32
SF3B3-204ENST00000563739 TRIB2Q92519 343 aa13.03□□□□□ -0.32
SF3B3-204ENST00000563739 TRIM75PA6NK02 468 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 ENTPD3O75355 529 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 IFIT1P09914 478 aaKnown RBP13.02□□□□□ -0.33
SF3B3-204ENST00000563739 COL6A1P12109 1028 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 ADORA1P30542 326 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 FASTKD5Q7L8L6 764 aaKnown RBP13.02□□□□□ -0.33
SF3B3-204ENST00000563739 ANKLE1Q8NAG6 615 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 LPIN2Q92539 896 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms