RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 PPATQ06203 517 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 PPIL2Q13356 520 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 CEP85Q6P2H3 762 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 FAM43AQ8N2R8 423 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 DDX4Q9NQI0 724 aaKnown RBP12.65□□□□□ -0.38
CLK3-205ENST00000561673 SNRKQ9NRH2 765 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 RAI14Q9P0K7 980 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 TNRC18O15417 2968 aaPredicted RBP12.65□□□□□ -0.38
CLK3-205ENST00000561673 DDTLA6NHG4 134 aaPredicted RBP12.64□□□□□ -0.39
CLK3-205ENST00000561673 PHF20L1A8MW92 1017 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 BTBD19C9JJ37 291 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 MAP3K10Q02779 954 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 MLLT1Q03111 559 aaPredicted RBP12.64□□□□□ -0.39
CLK3-205ENST00000561673 SNAPC2Q13487 334 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 PICALMQ13492 652 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 CCDC158Q5M9N0 1113 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 TTC39AQ5SRH9 613 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 FBXO46Q6PJ61 603 aaPredicted RBP12.64□□□□□ -0.39
CLK3-205ENST00000561673 OTOP1Q7RTM1 612 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 ZSCAN29Q8IWY8 852 aaPredicted RBP12.64□□□□□ -0.39
CLK3-205ENST00000561673 LRP2BPQ9P2M1 347 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 RFX7Q2KHR2 1363 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 ATRNL1Q5VV63 1379 aa12.64□□□□□ -0.39
CLK3-205ENST00000561673 CYP2E1P05181 493 aaPredicted RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 LDHCP07864 332 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 SLURP2P0DP57 97 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 MS4A1P11836 297 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 SOX10P56693 466 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 CAP1Q01518 475 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 SP3Q02447 781 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 TAF1CQ15572 869 aaPredicted RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 NOL9Q5SY16 702 aaKnown RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 CD99L2Q8TCZ2 262 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 EAF2Q96CJ1 260 aaPredicted RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 ERO1AQ96HE7 468 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 CCDC8Q9H0W5 538 aaPredicted RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 ZFYVE28Q9HCC9 887 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 TLR7Q9NYK1 1049 aaKnown RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 DBNLQ9UJU6 430 aaKnown RBP12.63□□□□□ -0.39
CLK3-205ENST00000561673 TRIM17Q9Y577 477 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 LAMB1P07942 1786 aa12.63□□□□□ -0.39
CLK3-205ENST00000561673 ZNF512BQ96KM6 892 aaPredicted RBP12.62□□□□□ -0.39
CLK3-205ENST00000561673 KCNH4Q9UQ05 1017 aa12.62□□□□□ -0.39
CLK3-205ENST00000561673 EXOC6BQ9Y2D4 811 aa12.62□□□□□ -0.39
CLK3-205ENST00000561673 MYH2Q9UKX2 1941 aa12.62□□□□□ -0.39
CLK3-205ENST00000561673 BRCA2P51587 3418 aa12.62□□□□□ -0.39
CLK3-205ENST00000561673 MAP4K4O95819 1239 aaPredicted RBP12.61□□□□□ -0.39
CLK3-205ENST00000561673 ZAP70P43403 619 aa12.61□□□□□ -0.39
CLK3-205ENST00000561673 NAA16Q6N069 864 aaPredicted RBP12.61□□□□□ -0.39
CLK3-205ENST00000561673 EFCC1Q9HA90 598 aa12.61□□□□□ -0.39
CLK3-205ENST00000561673 ZCCHC17Q9NP64 241 aaKnown RBP12.61□□□□□ -0.39
CLK3-205ENST00000561673 ZBTB40Q9NUA8 1239 aa12.61□□□□□ -0.39
CLK3-205ENST00000561673 RCAN3Q9UKA8 241 aa12.61□□□□□ -0.39
CLK3-205ENST00000561673 COG6Q9Y2V7 657 aa12.61□□□□□ -0.39
CLK3-205ENST00000561673 TLR2O60603 784 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 PTPRAP18433 802 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 MOGSQ13724 837 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 ERC1Q8IUD2 1116 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 SIRT2Q8IXJ6 389 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 TEX11Q8IYF3 940 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 SCYL3Q8IZE3 742 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 SH3RF3Q8TEJ3 882 aaPredicted RBP12.6□□□□□ -0.39
CLK3-205ENST00000561673 PIH1D3Q9NQM4 214 aaKnown RBP12.6□□□□□ -0.39
CLK3-205ENST00000561673 PICK1Q9NRD5 415 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 PTPN22Q9Y2R2 807 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 ZHX2Q9Y6X8 837 aa12.6□□□□□ -0.39
CLK3-205ENST00000561673 MKI67P46013 3256 aaKnown RBP12.59□□□□□ -0.39
CLK3-205ENST00000561673 PDHXO00330 501 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 CXCL11O14625 94 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 TBC1D12O60347 775 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 CTNND1O60716 968 aaKnown RBP12.59□□□□□ -0.39
CLK3-205ENST00000561673 ANKRD23Q86SG2 305 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 ADGRA1Q86SQ6 560 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 AACSQ86V21 672 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 RPAP2Q8IXW5 612 aaPredicted RBP12.59□□□□□ -0.39
CLK3-205ENST00000561673 OSBPL5Q9H0X9 879 aaPredicted RBP12.59□□□□□ -0.39
CLK3-205ENST00000561673 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLK3-205ENST00000561673 AATFQ9NY61 560 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLK3-205ENST00000561673 DDX19BQ9UMR2 479 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 AFG3L2Q9Y4W6 797 aa12.59□□□□□ -0.39
CLK3-205ENST00000561673 FAM196BA6NMK8 535 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 BAG3O95817 575 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 PPP4CP60510 307 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 HSP90AB4PQ58FF6 505 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 GPAT2Q6NUI2 795 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 C17orf99Q6UX52 265 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 RHPN1Q8TCX5 695 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 NOL10Q9BSC4 688 aaKnown RBP12.58□□□□□ -0.4
CLK3-205ENST00000561673 IL1RAPL2Q9NP60 686 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.58□□□□□ -0.4
CLK3-205ENST00000561673 NDUFB9Q9Y6M9 179 aa12.58□□□□□ -0.4
CLK3-205ENST00000561673 AK9Q5TCS8 1911 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 A0A0G2JLL6 359 aaPredicted RBP12.57□□□□□ -0.4
CLK3-205ENST00000561673 APBB1O00213 710 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 PLCG2P16885 1265 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 LACTBP83111 547 aaPredicted RBP12.57□□□□□ -0.4
CLK3-205ENST00000561673 ARHGEF6Q15052 776 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 C20orf194Q5TEA3 1177 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 PRRT2Q7Z6L0 340 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms