RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 TRIM17Q9Y577 477 aa17.27■□□□□ 0.36
TPM1-223ENST00000560445 FPGT-TNNI3KV9GXZ4 949 aa17.27■□□□□ 0.36
TPM1-223ENST00000560445 COL2A1P02458 1487 aaPredicted RBP17.26■□□□□ 0.35
TPM1-223ENST00000560445 GPR75-ASB3A0A0A6YYF3 556 aa17.26■□□□□ 0.35
TPM1-223ENST00000560445 ZBTB7BO15156 539 aaPredicted RBP17.26■□□□□ 0.35
TPM1-223ENST00000560445 MIGA2Q7L4E1 593 aa17.26■□□□□ 0.35
TPM1-223ENST00000560445 EFCC1Q9HA90 598 aa17.26■□□□□ 0.35
TPM1-223ENST00000560445 FAM198AQ9UFP1 575 aa17.26■□□□□ 0.35
TPM1-223ENST00000560445 RFX7Q2KHR2 1363 aa17.26■□□□□ 0.35
TPM1-223ENST00000560445 MAST2Q6P0Q8 1798 aa17.25■□□□□ 0.35
TPM1-223ENST00000560445 HMMRO75330 724 aa17.25■□□□□ 0.35
TPM1-223ENST00000560445 GNRH1P01148 92 aa17.25■□□□□ 0.35
TPM1-223ENST00000560445 PTPN18Q99952 460 aa17.25■□□□□ 0.35
TPM1-223ENST00000560445 DDX19BQ9UMR2 479 aa17.25■□□□□ 0.35
TPM1-223ENST00000560445 CXCL11O14625 94 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 IRF6O14896 467 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 ANKRD23Q86SG2 305 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 SCYL3Q8IZE3 742 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.24■□□□□ 0.35
TPM1-223ENST00000560445 CNKSR2Q8WXI2 1034 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 NSUN4Q96CB9 384 aaKnown RBP17.24■□□□□ 0.35
TPM1-223ENST00000560445 KCNH4Q9UQ05 1017 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 ATRNL1Q5VV63 1379 aa17.24■□□□□ 0.35
TPM1-223ENST00000560445 INPP5BP32019 993 aa17.23■□□□□ 0.35
TPM1-223ENST00000560445 PICALMQ13492 652 aa17.23■□□□□ 0.35
TPM1-223ENST00000560445 NAA16Q6N069 864 aaPredicted RBP17.23■□□□□ 0.35
TPM1-223ENST00000560445 FASTKD5Q7L8L6 764 aaKnown RBP17.23■□□□□ 0.35
TPM1-223ENST00000560445 OTOP1Q7RTM1 612 aa17.23■□□□□ 0.35
TPM1-223ENST00000560445 TBC1D2Q9BYX2 928 aa17.23■□□□□ 0.35
TPM1-223ENST00000560445 R3HDMLQ9H3Y0 253 aa17.23■□□□□ 0.35
TPM1-223ENST00000560445 C1orf115Q9H7X2 142 aa17.23■□□□□ 0.35
TPM1-223ENST00000560445 TBC1D12O60347 775 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 TLR2O60603 784 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 CTNND1O60716 968 aaKnown RBP17.22■□□□□ 0.35
TPM1-223ENST00000560445 RLBP1P12271 317 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 MCAMP43121 646 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 PRMT2P55345 433 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 CEP85Q6P2H3 762 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 FAM43AQ8N2R8 423 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 CD99L2Q8TCZ2 262 aa17.22■□□□□ 0.35
TPM1-223ENST00000560445 PARK7Q99497 189 aaKnown RBP17.22■□□□□ 0.35
TPM1-223ENST00000560445 DHX36Q9H2U1 1008 aaKnown RBP17.22■□□□□ 0.35
TPM1-223ENST00000560445 BTBD19C9JJ37 291 aa17.21■□□□□ 0.35
TPM1-223ENST00000560445 SOX10P56693 466 aa17.21■□□□□ 0.35
TPM1-223ENST00000560445 MAP3K10Q02779 954 aa17.21■□□□□ 0.35
TPM1-223ENST00000560445 NBPF11Q86T75 865 aa17.21■□□□□ 0.35
TPM1-223ENST00000560445 RPAP2Q8IXW5 612 aaPredicted RBP17.21■□□□□ 0.35
TPM1-223ENST00000560445 TEX11Q8IYF3 940 aa17.21■□□□□ 0.35
TPM1-223ENST00000560445 DBNDD2Q9BQY9 259 aa17.21■□□□□ 0.35
TPM1-223ENST00000560445 HERC5Q9UII4 1024 aaKnown RBP17.21■□□□□ 0.35
TPM1-223ENST00000560445 RHBDL3P58872 404 aa17.2■□□□□ 0.34
TPM1-223ENST00000560445 TRIM34Q9BYJ4 488 aa17.2■□□□□ 0.34
TPM1-223ENST00000560445 PTPN22Q9Y2R2 807 aa17.2■□□□□ 0.34
TPM1-223ENST00000560445 DOCK1Q14185 1865 aa17.2■□□□□ 0.34
TPM1-223ENST00000560445 HOXD10P28358 340 aa17.19■□□□□ 0.34
TPM1-223ENST00000560445 PI16Q6UXB8 463 aa17.19■□□□□ 0.34
TPM1-223ENST00000560445 TBC1D9Q6ZT07 1266 aa17.19■□□□□ 0.34
TPM1-223ENST00000560445 CLASRPQ8N2M8 674 aaKnown RBP17.19■□□□□ 0.34
TPM1-223ENST00000560445 PANK1Q8TE04 598 aa17.19■□□□□ 0.34
TPM1-223ENST00000560445 OSBPL5Q9H0X9 879 aaPredicted RBP17.19■□□□□ 0.34
TPM1-223ENST00000560445 RCAN3Q9UKA8 241 aa17.19■□□□□ 0.34
TPM1-223ENST00000560445 SLC45A1Q9Y2W3 748 aa17.19■□□□□ 0.34
TPM1-223ENST00000560445 PHF20L1A8MW92 1017 aa17.18■□□□□ 0.34
TPM1-223ENST00000560445 PDHXO00330 501 aa17.18■□□□□ 0.34
TPM1-223ENST00000560445 MAP3K12Q12852 859 aa17.18■□□□□ 0.34
TPM1-223ENST00000560445 TTF1Q15361 905 aaPredicted RBP17.18■□□□□ 0.34
TPM1-223ENST00000560445 ZFPM1Q8IX07 1006 aa17.18■□□□□ 0.34
TPM1-223ENST00000560445 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.18■□□□□ 0.34
TPM1-223ENST00000560445 PI4KBQ9UBF8 816 aa17.18■□□□□ 0.34
TPM1-223ENST00000560445 DBNLQ9UJU6 430 aaKnown RBP17.18■□□□□ 0.34
TPM1-223ENST00000560445 ZHX2Q9Y6X8 837 aa17.18■□□□□ 0.34
TPM1-223ENST00000560445 DDTLA6NHG4 134 aaPredicted RBP17.17■□□□□ 0.34
TPM1-223ENST00000560445 HLA-DOAP06340 250 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 PTPRAP18433 802 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 PPP4CP60510 307 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 LACTBP83111 547 aaPredicted RBP17.17■□□□□ 0.34
TPM1-223ENST00000560445 AACSQ86V21 672 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 KIF1BPQ96EK5 621 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 AS3MTQ9HBK9 375 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 DDX4Q9NQI0 724 aaKnown RBP17.17■□□□□ 0.34
TPM1-223ENST00000560445 SNRKQ9NRH2 765 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 GINM1Q9NU53 330 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 PNMA3Q9UL41 463 aa17.17■□□□□ 0.34
TPM1-223ENST00000560445 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.17■□□□□ 0.34
TPM1-223ENST00000560445 PDE4DIPQ5VU43 2346 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 A0A0G2JLL6 359 aaPredicted RBP17.16■□□□□ 0.34
TPM1-223ENST00000560445 RAB11FIP3O75154 756 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 PABPC4Q13310 644 aaKnown RBP eCLIP17.16■□□□□ 0.34
TPM1-223ENST00000560445 SLC9C1Q4G0N8 1177 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 SH3BP5LQ7L8J4 393 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 PRRT2Q7Z6L0 340 aaPredicted RBP17.16■□□□□ 0.34
TPM1-223ENST00000560445 ARMC5Q96C12 935 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 TMEM106CQ9BVX2 250 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 AATFQ9NY61 560 aaKnown RBP eCLIP17.16■□□□□ 0.34
TPM1-223ENST00000560445 EXOC6BQ9Y2D4 811 aa17.16■□□□□ 0.34
TPM1-223ENST00000560445 IDH1O75874 414 aaKnown RBP17.15■□□□□ 0.34
TPM1-223ENST00000560445 CYP2E1P05181 493 aaPredicted RBP17.15■□□□□ 0.34
TPM1-223ENST00000560445 ZAP70P43403 619 aa17.15■□□□□ 0.34
TPM1-223ENST00000560445 PDE3AQ14432 1141 aa17.15■□□□□ 0.34
TPM1-223ENST00000560445 ZNF384Q8TF68 577 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms