RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 PITPNM2Q9BZ72 1349 aa7.66□□□□□ -1.18
SPG11-221ENST00000560299 ZNF541Q9H0D2 1346 aa7.66□□□□□ -1.18
SPG11-221ENST00000560299 COL1A1P02452 1464 aaPredicted RBP7.66□□□□□ -1.18
SPG11-221ENST00000560299 MROH7-TTC4A0A0A0MT08 1334 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 H7C1D1 291 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 ZNF213O14771 459 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 ST18O60284 1047 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 HMGB1P09429 215 aaKnown RBP7.65□□□□□ -1.18
SPG11-221ENST00000560299 USP17L8P0C7I0 530 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 EPHX2P34913 555 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 TDO2P48775 406 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 C1QTNF8P60827 252 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 ALX1Q15699 326 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 TSGA10IPQ3SY00 556 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 SLFNL1Q499Z3 407 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 CREB3L3Q68CJ9 461 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 GIMAP6Q6P9H5 292 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 HHIPL2Q6UWX4 724 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 OGFOD1Q8N543 542 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 MIGA1Q8NAN2 632 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 TEKT1Q969V4 418 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 ARMT1Q9H993 441 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 NMRK2Q9NPI5 230 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 ATP8A2Q9NTI2 1148 aa7.65□□□□□ -1.18
SPG11-221ENST00000560299 TTF2Q9UNY4 1162 aaKnown RBP7.65□□□□□ -1.18
SPG11-221ENST00000560299 SCN9AQ15858 1988 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 MYH2Q9UKX2 1941 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 ZNF646O15015 1829 aaPredicted RBP7.64□□□□□ -1.19
SPG11-221ENST00000560299 MAST2Q6P0Q8 1798 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 ZMYM6O95789 1325 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 GPR75-ASB3A0A0A6YYF3 556 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 UNCXA6NJT0 531 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 F8W031 263 aaPredicted RBP7.64□□□□□ -1.19
SPG11-221ENST00000560299 PSMD14O00487 310 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 SLC27A2O14975 620 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 FGAP02671 866 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 CHGBP05060 677 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 SLC3A2P08195 630 aaKnown RBP7.64□□□□□ -1.19
SPG11-221ENST00000560299 USP5P45974 858 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 MCM2P49736 904 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 RBM5P52756 815 aaKnown RBP eCLIP7.64□□□□□ -1.19
SPG11-221ENST00000560299 PPP4CP60510 307 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 TRDNQ13061 729 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 VPS53Q5VIR6 699 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 HSCBQ8IWL3 235 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 IFNL3Q8IZI9 196 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 LCORLQ8N3X6 602 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 KCNB2Q92953 911 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 IL17RAQ96F46 866 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 ZBED3Q96IU2 234 aaPredicted RBP7.64□□□□□ -1.19
SPG11-221ENST00000560299 TM6SF1Q9BZW5 370 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 RRAGCQ9HB90 399 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 AATFQ9NY61 560 aaKnown RBP eCLIP7.64□□□□□ -1.19
SPG11-221ENST00000560299 SERPINA10Q9UK55 444 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 SNX14Q9Y5W7 946 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 CYP46A1Q9Y6A2 500 aa7.64□□□□□ -1.19
SPG11-221ENST00000560299 GAKO14976 1311 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 PASKQ96RG2 1323 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 GSG1L2A8MUP6 293 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 ITGBL1O95965 494 aaPredicted RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 BTDP43251 543 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 GMPSP49915 693 aaPredicted RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 NEK4P51957 841 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 DIXDC1Q155Q3 683 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 FKBP1CQ5VVH2 108 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 BLOC1S2Q6QNY1 142 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 ADGRA1Q86SQ6 560 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 KIAA0825Q8IV33 1275 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 CERS5Q8N5B7 392 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 HHIPL1Q96JK4 782 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 IPO9Q96P70 1041 aaKnown RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 RIOK1Q9BRS2 568 aaKnown RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 RNF41Q9H4P4 317 aaPredicted RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 KCNQ5Q9NR82 932 aa7.63□□□□□ -1.19
SPG11-221ENST00000560299 BMP2KQ9NSY1 1161 aaPredicted RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 CNOT7Q9UIV1 285 aaKnown RBP7.63□□□□□ -1.19
SPG11-221ENST00000560299 RAD17O75943 681 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 CYP21A2P08686 494 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 PCP11498 1178 aaKnown RBP7.62□□□□□ -1.19
SPG11-221ENST00000560299 CASTP20810 708 aaKnown RBP7.62□□□□□ -1.19
SPG11-221ENST00000560299 CRKP46108 304 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 NT5C2P49902 561 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 DYNLL1P63167 89 aaKnown RBP7.62□□□□□ -1.19
SPG11-221ENST00000560299 ANKRD1Q15327 319 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 GRIK5Q16478 980 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 MFSD6Q6ZSS7 791 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 CDC37L1Q7L3B6 337 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 RALYLQ86SE5 291 aaKnown RBP7.62□□□□□ -1.19
SPG11-221ENST00000560299 TEX11Q8IYF3 940 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 ZNF384Q8TF68 577 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 SNX21Q969T3 373 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 ZDHHC15Q96MV8 337 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 JAKMIP1Q96N16 626 aaKnown RBP7.62□□□□□ -1.19
SPG11-221ENST00000560299 NEK1Q96PY6 1258 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 KIF2CQ99661 725 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 CNNM2Q9H8M5 875 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 ZNF287Q9HBT7 754 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 TMOD2Q9NZR1 351 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 ARPP21Q9UBL0 812 aaPredicted RBP7.62□□□□□ -1.19
SPG11-221ENST00000560299 DAGLAQ9Y4D2 1042 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms