RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NME2P22392 152 aa8.95□□□□□ -0.98
VPS13C-208ENST00000559119 ENOX2Q16206 610 aaKnown RBP8.95□□□□□ -0.98
VPS13C-208ENST00000559119 ZNF574Q6ZN55 896 aaPredicted RBP8.95□□□□□ -0.98
VPS13C-208ENST00000559119 FAM181AQ8N9Y4 354 aa8.95□□□□□ -0.98
VPS13C-208ENST00000559119 STK35Q8TDR2 534 aa8.95□□□□□ -0.98
VPS13C-208ENST00000559119 ACSBG1Q96GR2 724 aa8.95□□□□□ -0.98
VPS13C-208ENST00000559119 CBX8Q9HC52 389 aa8.95□□□□□ -0.98
VPS13C-208ENST00000559119 BRD1O95696 1058 aa8.94□□□□□ -0.98
VPS13C-208ENST00000559119 ITGB5P18084 799 aa8.94□□□□□ -0.98
VPS13C-208ENST00000559119 DSC3Q14574 896 aa8.94□□□□□ -0.98
VPS13C-208ENST00000559119 PLD6Q8N2A8 252 aaKnown RBP8.94□□□□□ -0.98
VPS13C-208ENST00000559119 TREHO43280 583 aa8.93□□□□□ -0.98
VPS13C-208ENST00000559119 BNIP3Q12983 259 aa8.93□□□□□ -0.98
VPS13C-208ENST00000559119 ZC3H12AQ5D1E8 599 aaKnown RBP8.93□□□□□ -0.98
VPS13C-208ENST00000559119 SPRED2Q7Z698 418 aa8.93□□□□□ -0.98
VPS13C-208ENST00000559119 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS13C-208ENST00000559119 LEFTY1O75610 366 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 NEFMP07197 916 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 ERVK-24P63145 666 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 RNF214Q8ND24 703 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 GPBAR1Q8TDU6 330 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 ISL2Q96A47 359 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 DUSP23Q9BVJ7 150 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 SAMM50Q9Y512 469 aa8.92□□□□□ -0.98
VPS13C-208ENST00000559119 GSTT1P30711 240 aa8.91□□□□□ -0.98
VPS13C-208ENST00000559119 ZNF792Q3KQV3 632 aa8.91□□□□□ -0.98
VPS13C-208ENST00000559119 OGFOD2Q6N063 350 aa8.91□□□□□ -0.98
VPS13C-208ENST00000559119 TPTE2Q6XPS3 522 aa8.91□□□□□ -0.98
VPS13C-208ENST00000559119 NECAB3Q96P71 396 aaPredicted RBP8.91□□□□□ -0.98
VPS13C-208ENST00000559119 VAV3Q9UKW4 847 aa8.91□□□□□ -0.98
VPS13C-208ENST00000559119 BIN1O00499 593 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 MAPK8P45983 427 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 PRKCQQ04759 706 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 ZNF252P-AS1Q0IIN9 211 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 IFI16Q16666 785 aaKnown RBP8.9□□□□□ -0.98
VPS13C-208ENST00000559119 TOP6BLQ8N6T0 577 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 KRTAP9-9Q9BYP9 154 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 KRTAP9-4Q9BYQ2 154 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 CEP44Q9C0F1 390 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 SRCIN1Q9C0H9 1055 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 MKNK2Q9HBH9 465 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 PICK1Q9NRD5 415 aa8.9□□□□□ -0.98
VPS13C-208ENST00000559119 CD8BP10966 210 aa8.89□□□□□ -0.99
VPS13C-208ENST00000559119 WFDC3Q8IUB2 231 aa8.89□□□□□ -0.99
VPS13C-208ENST00000559119 ZSCAN29Q8IWY8 852 aaPredicted RBP8.89□□□□□ -0.99
VPS13C-208ENST00000559119 C3orf58Q8NDZ4 430 aa8.89□□□□□ -0.99
VPS13C-208ENST00000559119 FBF1Q8TES7 1133 aa8.89□□□□□ -0.99
VPS13C-208ENST00000559119 CEACAM5P06731 702 aa8.88□□□□□ -0.99
VPS13C-208ENST00000559119 OXCT1P55809 520 aa8.88□□□□□ -0.99
VPS13C-208ENST00000559119 HRASLS5Q96KN8 279 aa8.88□□□□□ -0.99
VPS13C-208ENST00000559119 PPM1HQ9ULR3 514 aa8.88□□□□□ -0.99
VPS13C-208ENST00000559119 TMEM265A0A087WTH1 108 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 PAPLNO95428 1278 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 FUT4P22083 530 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 AOC3Q16853 763 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 PPM1JQ5JR12 505 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 MPRIPQ6WCQ1 1025 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 CSADQ9Y600 493 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 U3KQE9 123 aa8.87□□□□□ -0.99
VPS13C-208ENST00000559119 ENC1O14682 589 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 TRIM37O94972 964 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 ITIH2P19823 946 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 BMP6P22004 513 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 LRRC14Q15048 493 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 ALG1LQ6GMV1 187 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 PI4K2BQ8TCG2 481 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 GRIN3AQ8TCU5 1115 aa8.86□□□□□ -0.99
VPS13C-208ENST00000559119 RC3H2Q9HBD1 1191 aaKnown RBP8.86□□□□□ -0.99
VPS13C-208ENST00000559119 DCDC2CA8MYV0 355 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 GIPC1O14908 333 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 FBXO24O75426 580 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 PAGE1O75459 146 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 CD96P40200 585 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 ATP2B2Q01814 1243 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 LLGL2Q6P1M3 1020 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 POU5F2Q8N7G0 328 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 CACNA2D2Q9NY47 1150 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 GTF2IRD1Q9UHL9 959 aa8.85□□□□□ -0.99
VPS13C-208ENST00000559119 FMR1Q06787 632 aaKnown RBP eCLIP8.84□□□□□ -0.99
VPS13C-208ENST00000559119 CDC37L1Q7L3B6 337 aa8.84□□□□□ -0.99
VPS13C-208ENST00000559119 ATG4DQ86TL0 474 aaPredicted RBP8.84□□□□□ -0.99
VPS13C-208ENST00000559119 C12orf40Q86WS4 652 aa8.84□□□□□ -0.99
VPS13C-208ENST00000559119 OSBPL7Q9BZF2 842 aa8.84□□□□□ -0.99
VPS13C-208ENST00000559119 PRDM10Q9NQV6 1147 aa8.84□□□□□ -0.99
VPS13C-208ENST00000559119 PCDHA4Q9UN74 947 aa8.84□□□□□ -0.99
VPS13C-208ENST00000559119 PLAGL2Q9UPG8 496 aa8.84□□□□□ -0.99
VPS13C-208ENST00000559119 RNASE1P07998 156 aaKnown RBP8.83□□□□□ -1
VPS13C-208ENST00000559119 FZD5Q13467 585 aa8.83□□□□□ -1
VPS13C-208ENST00000559119 ANGEL2Q5VTE6 544 aaKnown RBP8.83□□□□□ -1
VPS13C-208ENST00000559119 SETDB2Q96T68 719 aa8.83□□□□□ -1
VPS13C-208ENST00000559119 MBNL3Q9NUK0 354 aaKnown RBP8.83□□□□□ -1
VPS13C-208ENST00000559119 SPG7Q9UQ90 795 aa8.83□□□□□ -1
VPS13C-208ENST00000559119 SNX11Q9Y5W9 270 aa8.83□□□□□ -1
VPS13C-208ENST00000559119 FANCGO15287 622 aa8.82□□□□□ -1
VPS13C-208ENST00000559119 ELMO3Q96BJ8 720 aa8.82□□□□□ -1
VPS13C-208ENST00000559119 HEXIM2Q96MH2 286 aaKnown RBP8.82□□□□□ -1
VPS13C-208ENST00000559119 ASB16Q96NS5 453 aa8.82□□□□□ -1
VPS13C-208ENST00000559119 IVNS1ABPQ9Y6Y0 642 aa8.82□□□□□ -1
VPS13C-208ENST00000559119 C8AP07357 584 aa8.81□□□□□ -1
VPS13C-208ENST00000559119 ZBTB37Q5TC79 503 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms