RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 POTECB2RU33 542 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 PATL2C9JE40 543 aaKnown RBP11.5□□□□□ -0.57
CUX1-216ENST00000558469 REC8O95072 547 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 HSPD1P10809 573 aaKnown RBP11.5□□□□□ -0.57
CUX1-216ENST00000558469 EPHX2P34913 555 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 HIRAP54198 1017 aaPredicted RBP11.5□□□□□ -0.57
CUX1-216ENST00000558469 CACNB3P54284 484 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 BACH2Q9BYV9 841 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 RRAGCQ9HB90 399 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 TMOD2Q9NZR1 351 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 ZNF70Q9UC06 446 aaPredicted RBP11.5□□□□□ -0.57
CUX1-216ENST00000558469 TCP10L2B9ZVM9 353 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 FOXP2O15409 715 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 EIF5BO60841 1220 aaKnown RBP11.49□□□□□ -0.57
CUX1-216ENST00000558469 WDHD1O75717 1129 aaPredicted RBP11.49□□□□□ -0.57
CUX1-216ENST00000558469 PICALMQ13492 652 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 MAPKAPK5Q8IW41 473 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 DSCC1Q9BVC3 393 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 LSG1Q9H089 658 aaKnown RBP11.49□□□□□ -0.57
CUX1-216ENST00000558469 VEZTQ9HBM0 779 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 ATP8A2Q9NTI2 1148 aa11.49□□□□□ -0.57
CUX1-216ENST00000558469 ASTN2O75129 1339 aaPredicted RBP11.49□□□□□ -0.57
CUX1-216ENST00000558469 VEGFAP15692 232 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 TDO2P48775 406 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 TCP10Q12799 353 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 NFIAQ12857 509 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 EAPPQ56P03 285 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 ANGEL2Q5VTE6 544 aaKnown RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 USP50Q70EL3 339 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 IFNL3Q8IZI9 196 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 MAP4K1Q92918 833 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 DDRGK1Q96HY6 314 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 IDI2Q9BXS1 227 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 NACAP1Q9BZK3 213 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 TAF1DQ9H5J8 278 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 EPB41L4AQ9HCS5 686 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 DCP1AQ9NPI6 582 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 DDX4Q9NQI0 724 aaKnown RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 FLT1P17948 1338 aa11.48□□□□□ -0.57
CUX1-216ENST00000558469 RPAP1Q9BWH6 1393 aaPredicted RBP11.48□□□□□ -0.57
CUX1-216ENST00000558469 SIPA1L1O43166 1804 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 FGAP02671 866 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 SLC4A8Q2Y0W8 1093 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 GIMAP6Q6P9H5 292 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 PNMA8AQ86V59 439 aaPredicted RBP11.47□□□□□ -0.57
CUX1-216ENST00000558469 USP26Q9BXU7 913 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 NAPBQ9H115 298 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 NMRK2Q9NPI5 230 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 MCM9Q9NXL9 1143 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 FAM198AQ9UFP1 575 aa11.47□□□□□ -0.57
CUX1-216ENST00000558469 MKRN1Q9UHC7 482 aaKnown RBP11.47□□□□□ -0.57
CUX1-216ENST00000558469 SAP30BPQ9UHR5 308 aaKnown RBP11.47□□□□□ -0.57
CUX1-216ENST00000558469 SCAF8Q9UPN6 1271 aaKnown RBP11.47□□□□□ -0.57
CUX1-216ENST00000558469 RBM8AQ9Y5S9 174 aaKnown RBP11.47□□□□□ -0.57
CUX1-216ENST00000558469 CNTNAP1P78357 1384 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 USP17L12C9JPN9 530 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 USP17L21D6R901 530 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 ENTPD3O75355 529 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 TNNI2P48788 182 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 ALX1Q15699 326 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 FKBP1CQ5VVH2 108 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 CTR9Q6PD62 1173 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 ZFPM1Q8IX07 1006 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 OSBPL5Q9H0X9 879 aaPredicted RBP11.46□□□□□ -0.57
CUX1-216ENST00000558469 GGA3Q9NZ52 723 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 CTNNA3Q9UI47 895 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 PALD1Q9ULE6 856 aa11.46□□□□□ -0.57
CUX1-216ENST00000558469 ZMYM6O95789 1325 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 CYP2D7A0A087X1C5 515 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 MINDY4BA8MYZ0 360 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 POLR3DP05423 398 aaPredicted RBP11.45□□□□□ -0.58
CUX1-216ENST00000558469 TNFAIP1Q13829 316 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 FAM83AQ86UY5 434 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 APOBEC3FQ8IUX4 373 aaKnown RBP11.45□□□□□ -0.58
CUX1-216ENST00000558469 ZSCAN29Q8IWY8 852 aaPredicted RBP11.45□□□□□ -0.58
CUX1-216ENST00000558469 AMOTL1Q8IY63 956 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 FAM151AQ8WW52 585 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 DCPSQ96C86 337 aaKnown RBP11.45□□□□□ -0.58
CUX1-216ENST00000558469 TMEM39BQ9GZU3 492 aa11.45□□□□□ -0.58
CUX1-216ENST00000558469 UPF2Q9HAU5 1272 aaKnown RBP11.45□□□□□ -0.58
CUX1-216ENST00000558469 ARPP21Q9UBL0 812 aaPredicted RBP11.45□□□□□ -0.58
CUX1-216ENST00000558469 PITPNM2Q9BZ72 1349 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 DDTLA6NHG4 134 aaPredicted RBP11.44□□□□□ -0.58
CUX1-216ENST00000558469 ZNF213O14771 459 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 EPB41L2O43491 1005 aaKnown RBP11.44□□□□□ -0.58
CUX1-216ENST00000558469 POTEIP0CG38 1075 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 POTEJP0CG39 1038 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 CYP2D6P10635 497 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 HAND2P61296 217 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 EVX2Q03828 476 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 RASA3Q14644 834 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 NECTIN1Q15223 517 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 IMMTQ16891 758 aaKnown RBP11.44□□□□□ -0.58
CUX1-216ENST00000558469 SBK1Q52WX2 424 aa11.44□□□□□ -0.58
CUX1-216ENST00000558469 ZC3H15Q8WU90 426 aaKnown RBP11.44□□□□□ -0.58
CUX1-216ENST00000558469 DHX36Q9H2U1 1008 aaKnown RBP11.44□□□□□ -0.58
CUX1-216ENST00000558469 GPBP1L1Q9HC44 474 aaPredicted RBP11.44□□□□□ -0.58
CUX1-216ENST00000558469 SMIM22K7EJ46 135 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 SLC27A2O14975 620 aa11.43□□□□□ -0.58
CUX1-216ENST00000558469 MCCP23508 829 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms