RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 PPP4R4Q6NUP7 873 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 APBB1IPQ7Z5R6 666 aaPredicted RBP4.99□□□□□ -1.61
TDP1-217ENST00000557782 UBR7Q8N806 425 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 RIN3Q8TB24 985 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 TMEM40Q8WWA1 233 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 GAL3ST3Q96A11 431 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 NSUN5Q96P11 429 aaKnown RBP4.99□□□□□ -1.61
TDP1-217ENST00000557782 HHIPQ96QV1 700 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 APBA2Q99767 749 aa4.99□□□□□ -1.61
TDP1-217ENST00000557782 NCOA5Q9HCD5 579 aaKnown RBP4.99□□□□□ -1.61
TDP1-217ENST00000557782 POLR3KQ9Y2Y1 108 aaPredicted RBP4.99□□□□□ -1.61
TDP1-217ENST00000557782 GSG1L2A8MUP6 293 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 J3QL48 77 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 ATXN7O15265 892 aaPredicted RBP4.98□□□□□ -1.61
TDP1-217ENST00000557782 ADCY3O60266 1144 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 F11P03951 625 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 ATF3P18847 181 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 ARNTP27540 789 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 MCL1Q07820 350 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 LBRQ14739 615 aaKnown RBP4.98□□□□□ -1.61
TDP1-217ENST00000557782 RALBP1Q15311 655 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 SLC10A6Q3KNW5 377 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 RASIP1Q5U651 963 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.98□□□□□ -1.61
TDP1-217ENST00000557782 DHX32Q7L7V1 743 aaKnown RBP4.98□□□□□ -1.61
TDP1-217ENST00000557782 ZNF598Q86UK7 904 aaKnown RBP4.98□□□□□ -1.61
TDP1-217ENST00000557782 CYP4X1Q8N118 509 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 MYO1HQ8N1T3 1032 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 AFAP1L2Q8N4X5 818 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 DDX54Q8TDD1 881 aaKnown RBP4.98□□□□□ -1.61
TDP1-217ENST00000557782 BSNDQ8WZ55 320 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 CDC6Q99741 560 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 MUC3BQ9H195 1237 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 DYRK1BQ9Y463 629 aa4.98□□□□□ -1.61
TDP1-217ENST00000557782 DNAJC25-GNG10A0A024R161 153 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 SHTN1A0MZ66 631 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 EFSO43281 561 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 SMNDC1O75940 238 aaKnown RBP eCLIP4.97□□□□□ -1.61
TDP1-217ENST00000557782 SCGB1D2O95969 90 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 B3GALT4O96024 378 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 GHRHP01286 108 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 NAT2P11245 290 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 NEK2P51955 445 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 PCDH1Q08174 1060 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 NEUROD1Q13562 356 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 MAP7Q14244 749 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 CBX2Q14781 532 aaPredicted RBP4.97□□□□□ -1.61
TDP1-217ENST00000557782 C4orf46Q504U0 113 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 LHX8Q68G74 356 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 CNNM4Q6P4Q7 775 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 DDX46Q7L014 1031 aaKnown RBP4.97□□□□□ -1.61
TDP1-217ENST00000557782 NECAB2Q7Z6G3 386 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 AHI1Q8N157 1196 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 SAMD3Q8N6K7 520 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 BHMTQ93088 406 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 GAS2L1Q99501 681 aaPredicted RBP4.97□□□□□ -1.61
TDP1-217ENST00000557782 MPHOSPH6Q99547 160 aaKnown RBP4.97□□□□□ -1.61
TDP1-217ENST00000557782 PBX4Q9BYU1 374 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 RASSF4Q9H2L5 321 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 ANTXR1Q9H6X2 564 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 INTS7Q9NVH2 962 aaKnown RBP4.97□□□□□ -1.61
TDP1-217ENST00000557782 PKD2L1Q9P0L9 805 aa4.97□□□□□ -1.61
TDP1-217ENST00000557782 LOC102724428A0A0B4J2F2 783 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 E2F8A0AVK6 867 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 DCDC2BA2VCK2 349 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 FAM177BA6PVY3 158 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 HTR3BO95264 441 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 RAPGEF3O95398 923 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 ARAFP10398 606 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 CCNFP41002 786 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 SIK1P57059 783 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 GPLD1P80108 840 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 SPEM2Q0P670 501 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 LONRF3Q496Y0 759 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 C6orf118Q5T5N4 469 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 INTS3Q68E01 1043 aaKnown RBP4.96□□□□□ -1.62
TDP1-217ENST00000557782 KIAA1211LQ6NV74 962 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 UNC5AQ6ZN44 842 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 LRRTM3Q86VH5 581 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 CHPFQ8IZ52 775 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 PPM1KQ8N3J5 372 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 GRIN3AQ8TCU5 1115 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 UBE2Q2Q8WVN8 375 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 KISS1RQ969F8 398 aaPredicted RBP4.96□□□□□ -1.62
TDP1-217ENST00000557782 DHRS4Q9BTZ2 278 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 TARS2Q9BW92 718 aaKnown RBP4.96□□□□□ -1.62
TDP1-217ENST00000557782 MRPL4Q9BYD3 311 aaKnown RBP4.96□□□□□ -1.62
TDP1-217ENST00000557782 ASPSCR1Q9BZE9 553 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 MARK1Q9P0L2 795 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 GMIPQ9P107 970 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 HCSTQ9UBK5 93 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 DACH1Q9UI36 760 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 MRPS23Q9Y3D9 190 aaKnown RBP4.96□□□□□ -1.62
TDP1-217ENST00000557782 PCDHGC4Q9Y5F7 938 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 PRR36Q9H6K5 1346 aa4.96□□□□□ -1.62
TDP1-217ENST00000557782 TRAV20A0A0B4J274 112 aa4.95□□□□□ -1.62
TDP1-217ENST00000557782 GOLGA6CA6NDK9 693 aa4.95□□□□□ -1.62
TDP1-217ENST00000557782 GOLGA6BA6NDN3 693 aa4.95□□□□□ -1.62
TDP1-217ENST00000557782 TTLL8A6PVC2 850 aa4.95□□□□□ -1.62
TDP1-217ENST00000557782 CAPN5O15484 640 aaPredicted RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms