RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 NBPF12Q5TAG4 269 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-234ENST00000557703 FOXP4Q8IVH2 680 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-234ENST00000557703 OSBPL5Q9H0X9 879 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-234ENST00000557703 HELLSQ9NRZ9 838 aa16.47■□□□□ 0.23
SHMT2-234ENST00000557703 PI4KBQ9UBF8 816 aa16.47■□□□□ 0.23
SHMT2-234ENST00000557703 PDE4AP27815 886 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 USP5P45974 858 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 CACNB3P54284 484 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 MFAP1P55081 439 aaKnown RBP16.46■□□□□ 0.23
SHMT2-234ENST00000557703 DEFB115Q30KQ5 88 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 ZMYM1Q5SVZ6 1142 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 TTC22Q5TAA0 569 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 TTC6Q86TZ1 520 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 TGFBRAP1Q8WUH2 860 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 CCDC102AQ96A19 550 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 ZNF408Q9H9D4 720 aa16.46■□□□□ 0.23
SHMT2-234ENST00000557703 HERC5Q9UII4 1024 aaKnown RBP16.46■□□□□ 0.23
SHMT2-234ENST00000557703 ABT1Q9ULW3 272 aaKnown RBP16.46■□□□□ 0.23
SHMT2-234ENST00000557703 HUNKP57058 714 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 TCP10Q12799 353 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 LDLRAD1Q5T700 205 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 METTL16Q86W50 562 aaKnown RBP16.45■□□□□ 0.22
SHMT2-234ENST00000557703 ZSCAN29Q8IWY8 852 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-234ENST00000557703 AMOTL1Q8IY63 956 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 ANKRD13AQ8IZ07 590 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 MIGA1Q8NAN2 632 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 CSRNP1Q96S65 589 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 ZNF341Q9BYN7 854 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 MKRN1Q9UHC7 482 aaKnown RBP16.45■□□□□ 0.22
SHMT2-234ENST00000557703 FLT1P17948 1338 aa16.45■□□□□ 0.22
SHMT2-234ENST00000557703 HLA-DOAP06340 250 aa16.44■□□□□ 0.22
SHMT2-234ENST00000557703 DYNLL1P63167 89 aaKnown RBP16.44■□□□□ 0.22
SHMT2-234ENST00000557703 PICALMQ13492 652 aa16.44■□□□□ 0.22
SHMT2-234ENST00000557703 TTLL12Q14166 644 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-234ENST00000557703 REM2Q8IYK8 340 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-234ENST00000557703 OSBP2Q969R2 916 aa16.44■□□□□ 0.22
SHMT2-234ENST00000557703 RILPL2Q969X0 211 aa16.44■□□□□ 0.22
SHMT2-234ENST00000557703 STRBPQ96SI9 672 aaKnown RBP16.44■□□□□ 0.22
SHMT2-234ENST00000557703 PUS7LQ9H0K6 701 aaKnown RBP16.44■□□□□ 0.22
SHMT2-234ENST00000557703 EHD4Q9H223 541 aa16.44■□□□□ 0.22
SHMT2-234ENST00000557703 DDX4Q9NQI0 724 aaKnown RBP16.44■□□□□ 0.22
SHMT2-234ENST00000557703 GINM1Q9NU53 330 aa16.44■□□□□ 0.22
SHMT2-234ENST00000557703 USP2O75604 605 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-234ENST00000557703 MBD4O95243 580 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 MAP3K9P80192 1104 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 FMR1Q06787 632 aaKnown RBP eCLIP16.43■□□□□ 0.22
SHMT2-234ENST00000557703 PRAMEF18Q5VWM3 479 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 RGMBQ6NW40 437 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 KLRG1Q96E93 195 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 NACAP1Q9BZK3 213 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 ZNF112Q9UJU3 913 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 AK9Q5TCS8 1911 aa16.43■□□□□ 0.22
SHMT2-234ENST00000557703 FOCADQ5VW36 1801 aa16.42■□□□□ 0.22
SHMT2-234ENST00000557703 SDSP20132 328 aa16.42■□□□□ 0.22
SHMT2-234ENST00000557703 MCMDC2Q4G0Z9 681 aa16.42■□□□□ 0.22
SHMT2-234ENST00000557703 BMP2KLQ5H9B9 411 aa16.42■□□□□ 0.22
SHMT2-234ENST00000557703 RUFY2Q8WXA3 655 aa16.42■□□□□ 0.22
SHMT2-234ENST00000557703 DCP1AQ9NPI6 582 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-234ENST00000557703 ANGEL1Q9UNK9 670 aaKnown RBP16.42■□□□□ 0.22
SHMT2-234ENST00000557703 SCAF8Q9UPN6 1271 aaKnown RBP16.42■□□□□ 0.22
SHMT2-234ENST00000557703 CSADQ9Y600 493 aa16.42■□□□□ 0.22
SHMT2-234ENST00000557703 DDTLA6NHG4 134 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-234ENST00000557703 PATL2C9JE40 543 aaKnown RBP16.41■□□□□ 0.22
SHMT2-234ENST00000557703 GPAA1O43292 621 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 CTNND1O60716 968 aaKnown RBP16.41■□□□□ 0.22
SHMT2-234ENST00000557703 MAP2K2P36507 400 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 NOGQ13253 232 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 MAPKAPK5Q8IW41 473 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 LCORLQ8N3X6 602 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.41■□□□□ 0.228e-7■■□□□ 11.7
SHMT2-234ENST00000557703 SLC10A4Q96EP9 437 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 ARMT1Q9H993 441 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 DIAPH3Q9NSV4 1193 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 SLC4A4Q9Y6R1 1079 aa16.41■□□□□ 0.22
SHMT2-234ENST00000557703 ZBTB48P10074 688 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-234ENST00000557703 ZNF157P51786 506 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-234ENST00000557703 SBK1Q52WX2 424 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 NOL9Q5SY16 702 aaKnown RBP16.4■□□□□ 0.22
SHMT2-234ENST00000557703 DLK2Q6UY11 383 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 SH3BP5LQ7L8J4 393 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 ZFPM1Q8IX07 1006 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 DNAJC5GQ8N7S2 189 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 TRIM34Q9BYJ4 488 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 TBC1D2Q9BYX2 928 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 MCM9Q9NXL9 1143 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 ARPP21Q9UBL0 812 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-234ENST00000557703 SERPINB13Q9UIV8 391 aa16.4■□□□□ 0.22
SHMT2-234ENST00000557703 SSC5DA1L4H1 1573 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 POLR3DP05423 398 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-234ENST00000557703 GSPT1P15170 499 aaKnown RBP16.39■□□□□ 0.21
SHMT2-234ENST00000557703 INHBEP58166 350 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.39■□□□□ 0.21
SHMT2-234ENST00000557703 ZNF287Q9HBT7 754 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 SWAP70Q9UH65 585 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 PALD1Q9ULE6 856 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 RAD50Q92878 1312 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 CEP350Q5VT06 3117 aa16.39■□□□□ 0.21
SHMT2-234ENST00000557703 CDK5RAP2Q96SN8 1893 aa16.38■□□□□ 0.21
SHMT2-234ENST00000557703 GSG1L2A8MUP6 293 aa16.38■□□□□ 0.21
SHMT2-234ENST00000557703 UBE2Q2LH0YL09 131 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms