RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 PTPRFP10586 1907 aa17■□□□□ 0.31
TMEM260-215ENST00000557626 NOL9Q5SY16 702 aaKnown RBP17■□□□□ 0.31
TMEM260-215ENST00000557626 TIFAQ96CG3 184 aa17■□□□□ 0.31
TMEM260-215ENST00000557626 ZNF112Q9UJU3 913 aa17■□□□□ 0.31
TMEM260-215ENST00000557626 CFAP54Q96N23 3096 aa17■□□□□ 0.31
TMEM260-215ENST00000557626 CYP2B6P20813 491 aa16.99■□□□□ 0.31
TMEM260-215ENST00000557626 PRDM12Q9H4Q4 367 aa16.99■□□□□ 0.31
TMEM260-215ENST00000557626 A0A1B0GUL6 1792 aa16.98■□□□□ 0.31
TMEM260-215ENST00000557626 SMIM22K7EJ46 135 aa16.98■□□□□ 0.31
TMEM260-215ENST00000557626 NHLH1Q02575 133 aa16.98■□□□□ 0.31
TMEM260-215ENST00000557626 CACNB2Q08289 660 aaPredicted RBP16.98■□□□□ 0.31
TMEM260-215ENST00000557626 AAK1Q2M2I8 961 aa16.98■□□□□ 0.31
TMEM260-215ENST00000557626 CHD7Q9P2D1 2997 aa16.98■□□□□ 0.31
TMEM260-215ENST00000557626 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.97■□□□□ 0.31
TMEM260-215ENST00000557626 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.97■□□□□ 0.31
TMEM260-215ENST00000557626 TAF5LO75529 589 aa16.97■□□□□ 0.31
TMEM260-215ENST00000557626 IGFBP4P22692 258 aa16.97■□□□□ 0.31
TMEM260-215ENST00000557626 CCND3P30281 292 aaPredicted RBP16.97■□□□□ 0.31
TMEM260-215ENST00000557626 ZHX2Q9Y6X8 837 aa16.97■□□□□ 0.31
TMEM260-215ENST00000557626 ZDBF2Q9HCK1 2354 aa16.97■□□□□ 0.31
TMEM260-215ENST00000557626 ZKSCAN1P17029 563 aaPredicted RBP16.96■□□□□ 0.31
TMEM260-215ENST00000557626 ITGA6P23229 1130 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 KCNQ1P51787 676 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 TFF2Q03403 129 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 FKBP1CQ5VVH2 108 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 PLEKHF1Q96S99 279 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 PNMA3Q9UL41 463 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 USP34Q70CQ2 3546 aa16.96■□□□□ 0.31
TMEM260-215ENST00000557626 MAPK8IP3Q9UPT6 1336 aa16.96■□□□□ 0.3
TMEM260-215ENST00000557626 DDX10Q13206 875 aaKnown RBP16.95■□□□□ 0.3
TMEM260-215ENST00000557626 TRMT44Q8IYL2 757 aaKnown RBP16.95■□□□□ 0.3
TMEM260-215ENST00000557626 RLFQ13129 1914 aa16.95■□□□□ 0.3
TMEM260-215ENST00000557626 HOXB7P09629 217 aa16.94■□□□□ 0.3
TMEM260-215ENST00000557626 FOXK2Q01167 660 aa16.94■□□□□ 0.3
TMEM260-215ENST00000557626 ADGRE1Q14246 886 aa16.94■□□□□ 0.3
TMEM260-215ENST00000557626 TEKT1Q969V4 418 aa16.94■□□□□ 0.3
TMEM260-215ENST00000557626 PDLIM7Q9NR12 457 aa16.94■□□□□ 0.3
TMEM260-215ENST00000557626 AGTPBP1Q9UPW5 1226 aa16.94■□□□□ 0.3
TMEM260-215ENST00000557626 XRCC5P13010 732 aaKnown RBP16.93■□□□□ 0.3
TMEM260-215ENST00000557626 GCLCP48506 637 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-215ENST00000557626 NUDT12Q9BQG2 462 aa16.93■□□□□ 0.3
TMEM260-215ENST00000557626 PICK1Q9NRD5 415 aa16.93■□□□□ 0.3
TMEM260-215ENST00000557626 AFG3L2Q9Y4W6 797 aa16.93■□□□□ 0.3
TMEM260-215ENST00000557626 PLXNA1Q9UIW2 1896 aa16.93■□□□□ 0.3
TMEM260-215ENST00000557626 HDLBPQ00341 1268 aaKnown RBP16.92■□□□□ 0.3
TMEM260-215ENST00000557626 SOCS4Q8WXH5 440 aa16.92■□□□□ 0.3
TMEM260-215ENST00000557626 KHSRPQ92945 711 aaKnown RBP eCLIP16.92■□□□□ 0.3
TMEM260-215ENST00000557626 METTL22Q9BUU2 404 aaPredicted RBP16.92■□□□□ 0.3
TMEM260-215ENST00000557626 TRIM43BA6NCK2 446 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 PRR33A8MZF0 331 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 DNM1LO00429 736 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 PTPRAP18433 802 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 EPHB4P54760 987 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 SH3RF1Q7Z6J0 888 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 SCYL3Q8IZE3 742 aa16.91■□□□□ 0.3
TMEM260-215ENST00000557626 TRIM43Q96BQ3 446 aaPredicted RBP16.91■□□□□ 0.3
TMEM260-215ENST00000557626 PHAXQ9H814 394 aaKnown RBP16.91■□□□□ 0.3
TMEM260-215ENST00000557626 LRRC37A2A6NM11 1700 aa16.9■□□□□ 0.3
TMEM260-215ENST00000557626 TRIM75PA6NK02 468 aa16.9■□□□□ 0.3
TMEM260-215ENST00000557626 GRIK5Q16478 980 aa16.9■□□□□ 0.3
TMEM260-215ENST00000557626 TRIM60Q495X7 471 aa16.9■□□□□ 0.3
TMEM260-215ENST00000557626 TREML2Q5T2D2 321 aa16.9■□□□□ 0.3
TMEM260-215ENST00000557626 TDRD7Q8NHU6 1098 aaKnown RBP16.9■□□□□ 0.3
TMEM260-215ENST00000557626 ZDHHC15Q96MV8 337 aa16.9■□□□□ 0.3
TMEM260-215ENST00000557626 PHIPQ8WWQ0 1821 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 PPP2R1AP30153 589 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 RIPK4P57078 832 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 SLC39A5Q6ZMH5 540 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 CCDC129Q6ZRS4 1044 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 MICALL1Q8N3F8 863 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 FAM151AQ8WW52 585 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 TRANK1O15050 2925 aa16.89■□□□□ 0.29
TMEM260-215ENST00000557626 SKIV2LQ15477 1246 aaKnown RBP16.88■□□□□ 0.29
TMEM260-215ENST00000557626 APOBEC3HQ6NTF7 200 aaKnown RBP16.88■□□□□ 0.29
TMEM260-215ENST00000557626 LPAR1Q92633 364 aa16.88■□□□□ 0.29
TMEM260-215ENST00000557626 UIMC1Q96RL1 719 aa16.88■□□□□ 0.29
TMEM260-215ENST00000557626 PBX4Q9BYU1 374 aa16.88■□□□□ 0.29
TMEM260-215ENST00000557626 DOCK1Q14185 1865 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 C5orf42Q9H799 3197 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 PI4K2BG5E9Z4 385 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 PBX2P40425 430 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 TCP10Q12799 353 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 CCL14Q16627 93 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 FBXL18Q96ME1 805 aa16.87■□□□□ 0.29
TMEM260-215ENST00000557626 PNNQ9H307 717 aaKnown RBP16.87■□□□□ 0.29
TMEM260-215ENST00000557626 DDX20Q9UHI6 824 aaKnown RBP16.87■□□□□ 0.29
TMEM260-215ENST00000557626 LAS1LQ9Y4W2 734 aaKnown RBP16.87■□□□□ 0.29
TMEM260-215ENST00000557626 SPTBN4Q9H254 2564 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 CHL1O00533 1208 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 ERC2O15083 957 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 MSCO60682 206 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 DDX58O95786 925 aaKnown RBP16.86■□□□□ 0.29
TMEM260-215ENST00000557626 FPGSQ05932 587 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 LMOD3Q0VAK6 560 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 UBE3BQ7Z3V4 1068 aa16.86■□□□□ 0.29
TMEM260-215ENST00000557626 LOC285556D6RIA3 1793 aa16.85■□□□□ 0.29
TMEM260-215ENST00000557626 DOCK2Q92608 1830 aa16.85■□□□□ 0.29
TMEM260-215ENST00000557626 ANKRD18BA2A2Z9 1011 aa16.85■□□□□ 0.29
TMEM260-215ENST00000557626 ST18O60284 1047 aa16.85■□□□□ 0.29
TMEM260-215ENST00000557626 IGKV5-2P06315 115 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms