RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ADCY3O60266 1144 aa10.27□□□□□ -0.77
CCDC88C-214ENST00000557507 SGPL1O95470 568 aa10.27□□□□□ -0.77
CCDC88C-214ENST00000557507 PRDX5P30044 214 aa10.27□□□□□ -0.77
CCDC88C-214ENST00000557507 PUM3Q15397 648 aaKnown RBP10.27□□□□□ -0.77
CCDC88C-214ENST00000557507 ZFPM1Q8IX07 1006 aa10.27□□□□□ -0.77
CCDC88C-214ENST00000557507 A0A0G2JLL6 359 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 A0A1W2PPC1 479 aa10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 PHF20L1A8MW92 1017 aa10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 CXCL11O14625 94 aa10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 SLURP2P0DP57 97 aa10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 FLT3LGP49771 235 aa10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 PRRT2Q7Z6L0 340 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 DIS3LQ8TF46 1054 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-214ENST00000557507 UNC80Q8N2C7 3258 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 EVI5O60447 810 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 IFIT1P09914 478 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 RFX5P48382 616 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 GADL1Q6ZQY3 521 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 SH3BP5LQ7L8J4 393 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 SCYL3Q8IZE3 742 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 WDR66Q8TBY9 1149 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 DEFB118Q96PH6 123 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 PAK6Q9NQU5 681 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 STAP2Q9UGK3 403 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 ZHX2Q9Y6X8 837 aa10.25□□□□□ -0.77
CCDC88C-214ENST00000557507 LTBP2Q14767 1821 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 EYA2O00167 538 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 TNPO2O14787 897 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 SLC5A1P13866 664 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 PTPRAP18433 802 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 RGS3P49796 1198 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 IRF5Q13568 498 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 CCDC84Q86UT8 332 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 PXYLP1Q8TE99 480 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 PAWRQ96IZ0 340 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 CRISPLD2Q9H0B8 497 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 USP40Q9NVE5 1235 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 AFG3L2Q9Y4W6 797 aa10.24□□□□□ -0.77
CCDC88C-214ENST00000557507 TFRCP02786 760 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 LDHBP07195 334 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 FASTKD5Q7L8L6 764 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 ATG9AQ7Z3C6 839 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 SMCR8Q8TEV9 937 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 LPIN2Q92539 896 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 GDF15Q99988 308 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 USP44Q9H0E7 712 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 MRS2Q9HD23 443 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 DDX4Q9NQI0 724 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 PICK1Q9NRD5 415 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 TAOK2Q9UL54 1235 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 SLC45A1Q9Y2W3 748 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 SALL1Q9NSC2 1324 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 MYH1P12882 1939 aa10.23□□□□□ -0.77
CCDC88C-214ENST00000557507 DDTLA6NHG4 134 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 TRIM75PA6NK02 468 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 PHKA1P46020 1223 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 TREML2Q5T2D2 321 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 Q7L0L9 218 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 C7orf61Q8IZ16 206 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 MRPL50Q8N5N7 158 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 ANKRD13CQ8N6S4 541 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 IDI2Q9BXS1 227 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 ZMYND8Q9ULU4 1186 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 GAKO14976 1311 aa10.22□□□□□ -0.77
CCDC88C-214ENST00000557507 RLFQ13129 1914 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 ENTPD3O75355 529 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 MNX1P50219 401 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 MAP3K10Q02779 954 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 TRIM32Q13049 653 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 ATP2B3Q16720 1220 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 NECAB2Q7Z6G3 386 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 ZSCAN29Q8IWY8 852 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 SIL1Q9H173 461 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 AGTPBP1Q9UPW5 1226 aa10.21□□□□□ -0.77
CCDC88C-214ENST00000557507 FAM196BA6NMK8 535 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 PTPRCP08575 1304 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 SYN1P17600 705 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 ADORA1P30542 326 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 BMP8BP34820 402 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 PICALMQ13492 652 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 FAM110CQ1W6H9 321 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 COA7Q96BR5 231 aa10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 LRRFIP2Q9Y608 721 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-214ENST00000557507 COL2A1P02458 1487 aaPredicted RBP10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 ZNF521Q96K83 1311 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 SEMA3EO15041 775 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 CTNND1O60716 968 aaKnown RBP10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 HMGCRP04035 888 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 CAPN2P17655 700 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 MAGEA10P43363 369 aaPredicted RBP10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 RASGRF1Q13972 1273 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 DEFB123Q8N688 67 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 ANKLE1Q8NAG6 615 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 DENND2AQ9ULE3 1009 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 TTC28Q96AY4 2481 aa10.19□□□□□ -0.78
CCDC88C-214ENST00000557507 VCANP13611 3396 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 LAMA2P24043 3122 aaKnown RBP10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 MROH7-TTC4A0A0A0MT08 1334 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms