RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 COL9A1P20849 921 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 HIBADHP31937 336 aaKnown RBP15.59■□□□□ 0.09
SHMT2-230ENST00000557427 HDLBPQ00341 1268 aaKnown RBP15.59■□□□□ 0.09
SHMT2-230ENST00000557427 IFIT5Q13325 482 aaKnown RBP15.59■□□□□ 0.09
SHMT2-230ENST00000557427 FKBP1CQ5VVH2 108 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 DCAF15Q66K64 600 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 EXOC6Q8TAG9 804 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 ZDHHC15Q96MV8 337 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 SRCIN1Q9C0H9 1055 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 RAPGEFL1Q9UHV5 662 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 CHMP3Q9Y3E7 222 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 TTC28Q96AY4 2481 aa15.59■□□□□ 0.09
SHMT2-230ENST00000557427 DDX60LQ5H9U9 1706 aaKnown RBP15.59■□□□□ 0.09
SHMT2-230ENST00000557427 TRIM32Q13049 653 aa15.58■□□□□ 0.08
SHMT2-230ENST00000557427 NOL9Q5SY16 702 aaKnown RBP15.58■□□□□ 0.08
SHMT2-230ENST00000557427 HOOK2Q96ED9 719 aa15.58■□□□□ 0.08
SHMT2-230ENST00000557427 C11orf49Q9H6J7 331 aa15.58■□□□□ 0.08
SHMT2-230ENST00000557427 TAOK2Q9UL54 1235 aa15.58■□□□□ 0.08
SHMT2-230ENST00000557427 IQSEC3Q9UPP2 1182 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-230ENST00000557427 PFASO15067 1338 aa15.58■□□□□ 0.08
SHMT2-230ENST00000557427 RPAP1Q9BWH6 1393 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-230ENST00000557427 CXCL11O14625 94 aa15.57■□□□□ 0.08
SHMT2-230ENST00000557427 EPHA10Q5JZY3 1008 aa15.57■□□□□ 0.08
SHMT2-230ENST00000557427 TEKT1Q969V4 418 aa15.57■□□□□ 0.08
SHMT2-230ENST00000557427 CDH23Q9H251 3354 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 GRM8O00222 908 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 ALDH1L1O75891 902 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 MDM2Q00987 491 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-230ENST00000557427 LMBR1LQ6UX01 489 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 LDHAL6AQ6ZMR3 332 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 CDX2Q99626 313 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-230ENST00000557427 MRIQ9BWK5 157 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 SMC4Q9NTJ3 1288 aa15.56■□□□□ 0.08
SHMT2-230ENST00000557427 A0A0G2JLL6 359 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-230ENST00000557427 CHAF1AQ13111 956 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-230ENST00000557427 UBE4AQ14139 1066 aa15.55■□□□□ 0.08
SHMT2-230ENST00000557427 PRRT2Q7Z6L0 340 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-230ENST00000557427 FAM151AQ8WW52 585 aa15.55■□□□□ 0.08
SHMT2-230ENST00000557427 TMOD2Q9NZR1 351 aa15.55■□□□□ 0.08
SHMT2-230ENST00000557427 OGDHLQ9ULD0 1010 aa15.55■□□□□ 0.08
SHMT2-230ENST00000557427 ALDH1L2Q3SY69 923 aa15.54■□□□□ 0.08
SHMT2-230ENST00000557427 FBXO33Q7Z6M2 555 aa15.54■□□□□ 0.08
SHMT2-230ENST00000557427 ANKRD13CQ8N6S4 541 aa15.54■□□□□ 0.08
SHMT2-230ENST00000557427 MAFAQ8NHW3 353 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-230ENST00000557427 CRBNQ96SW2 442 aa15.54■□□□□ 0.08
SHMT2-230ENST00000557427 PUS3Q9BZE2 481 aaKnown RBP15.54■□□□□ 0.08
SHMT2-230ENST00000557427 CNNM1Q9NRU3 951 aa15.54■□□□□ 0.08
SHMT2-230ENST00000557427 PTPRCP08575 1304 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 HMGCRP04035 888 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 CT47B1P0C2W7 299 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-230ENST00000557427 NBPF7P0C2Y1 421 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-230ENST00000557427 COL6A1P12109 1028 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 TCP10Q12799 353 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 COA7Q96BR5 231 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 HMX1Q9NP08 348 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-230ENST00000557427 GJD2Q9UKL4 321 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 NOB1Q9ULX3 412 aaKnown RBP15.53■□□□□ 0.08
SHMT2-230ENST00000557427 SLC45A1Q9Y2W3 748 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 AFG3L2Q9Y4W6 797 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 ZHX2Q9Y6X8 837 aa15.53■□□□□ 0.08
SHMT2-230ENST00000557427 PHF20L1A8MW92 1017 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 NFIAQ12857 509 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 LRRC26Q2I0M4 334 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 CCDC57Q2TAC2 916 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 TAF7LQ5H9L4 462 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 GADL1Q6ZQY3 521 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 FASTKD5Q7L8L6 764 aaKnown RBP15.52■□□□□ 0.08
SHMT2-230ENST00000557427 ZFPM1Q8IX07 1006 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 SUCLG2Q96I99 432 aa15.52■□□□□ 0.08
SHMT2-230ENST00000557427 CACNA1FO60840 1977 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 PTPRAP18433 802 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 ZNF697Q5TEC3 545 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 HHIPL2Q6UWX4 724 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 TBC1D22AQ8WUA7 517 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 SEMA6BQ9H3T3 888 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 PTPRFP10586 1907 aa15.51■□□□□ 0.07
SHMT2-230ENST00000557427 ATRNL1Q5VV63 1379 aa15.5■□□□□ 0.07
SHMT2-230ENST00000557427 SLURP2P0DP57 97 aa15.5■□□□□ 0.07
SHMT2-230ENST00000557427 SMCR8Q8TEV9 937 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-230ENST00000557427 TRIB2Q92519 343 aa15.5■□□□□ 0.07
SHMT2-230ENST00000557427 KAZALD1Q96I82 304 aa15.5■□□□□ 0.07
SHMT2-230ENST00000557427 FAM198AQ9UFP1 575 aa15.5■□□□□ 0.07
SHMT2-230ENST00000557427 DNAH12Q6ZR08 3092 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 RARSP54136 660 aaKnown RBP15.49■□□□□ 0.07
SHMT2-230ENST00000557427 PDE3AQ14432 1141 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 FAM110CQ1W6H9 321 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 TREML2Q5T2D2 321 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 MAP3K21Q5TCX8 1036 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 C20orf194Q5TEA3 1177 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 CDC42EP5Q6NZY7 148 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 SCYL3Q8IZE3 742 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 MYLIPQ8WY64 445 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 USP44Q9H0E7 712 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-230ENST00000557427 PLXNB2O15031 1838 aa15.49■□□□□ 0.07
SHMT2-230ENST00000557427 PHIPQ8WWQ0 1821 aa15.48■□□□□ 0.07
SHMT2-230ENST00000557427 BCAR3O75815 825 aa15.48■□□□□ 0.07
SHMT2-230ENST00000557427 CCDC84Q86UT8 332 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-230ENST00000557427 SYMPKQ92797 1274 aaKnown RBP15.48■□□□□ 0.07
SHMT2-230ENST00000557427 TTYH1Q9H313 450 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms