RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 UBE4AQ14139 1066 aa11.79□□□□□ -0.52
SYNE2-224ENST00000557024 FAM83AQ86UY5 434 aa11.79□□□□□ -0.52
SYNE2-224ENST00000557024 PARK7Q99497 189 aaKnown RBP11.79□□□□□ -0.52
SYNE2-224ENST00000557024 KCNH4Q9UQ05 1017 aa11.79□□□□□ -0.52
SYNE2-224ENST00000557024 FLT3LGP49771 235 aa11.78□□□□□ -0.52
SYNE2-224ENST00000557024 HDLBPQ00341 1268 aaKnown RBP11.78□□□□□ -0.52
SYNE2-224ENST00000557024 APOBEC3HQ6NTF7 200 aaKnown RBP11.78□□□□□ -0.52
SYNE2-224ENST00000557024 VPS37DQ86XT2 251 aa11.78□□□□□ -0.52
SYNE2-224ENST00000557024 C7orf61Q8IZ16 206 aa11.78□□□□□ -0.52
SYNE2-224ENST00000557024 DIS3LQ8TF46 1054 aaKnown RBP11.78□□□□□ -0.52
SYNE2-224ENST00000557024 PAWRQ96IZ0 340 aaKnown RBP11.78□□□□□ -0.52
SYNE2-224ENST00000557024 ZDHHC15Q96MV8 337 aa11.78□□□□□ -0.52
SYNE2-224ENST00000557024 GDF15Q99988 308 aa11.78□□□□□ -0.52
SYNE2-224ENST00000557024 ZMYND8Q9ULU4 1186 aaPredicted RBP11.78□□□□□ -0.52
SYNE2-224ENST00000557024 STXBP5LQ9Y2K9 1186 aa11.78□□□□□ -0.52
SYNE2-224ENST00000557024 FRAT2O75474 233 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-224ENST00000557024 FKBP1CQ5VVH2 108 aa11.77□□□□□ -0.53
SYNE2-224ENST00000557024 GPAT2Q6NUI2 795 aa11.77□□□□□ -0.53
SYNE2-224ENST00000557024 GPR153Q6NV75 609 aa11.77□□□□□ -0.53
SYNE2-224ENST00000557024 COL25A1Q9BXS0 654 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-224ENST00000557024 PUS3Q9BZE2 481 aaKnown RBP11.77□□□□□ -0.53
SYNE2-224ENST00000557024 RYDENQ9NUL5 291 aaKnown RBP11.77□□□□□ -0.53
SYNE2-224ENST00000557024 A0A1B0GUL6 1792 aa11.77□□□□□ -0.53
SYNE2-224ENST00000557024 UNC80Q8N2C7 3258 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 F6X3S4 739 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 BMP8BP34820 402 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 TCP10Q12799 353 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 LHX8Q68G74 356 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 NECAB2Q7Z6G3 386 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 FBXO33Q7Z6M2 555 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 TBC1D22AQ8WUA7 517 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 KIF12Q96FN5 646 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 CRISPLD2Q9H0B8 497 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 PAK6Q9NQU5 681 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-224ENST00000557024 MTMR10Q9NXD2 777 aa11.76□□□□□ -0.53
SYNE2-224ENST00000557024 RPAP1Q9BWH6 1393 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-224ENST00000557024 TNPO2O14787 897 aaKnown RBP11.75□□□□□ -0.53
SYNE2-224ENST00000557024 SYN1P17600 705 aa11.75□□□□□ -0.53
SYNE2-224ENST00000557024 BCAMP50895 628 aa11.75□□□□□ -0.53
SYNE2-224ENST00000557024 BEND3Q5T5X7 828 aa11.75□□□□□ -0.53
SYNE2-224ENST00000557024 PXYLP1Q8TE99 480 aa11.75□□□□□ -0.53
SYNE2-224ENST00000557024 ZNF112Q9UJU3 913 aa11.75□□□□□ -0.53
SYNE2-224ENST00000557024 CCER2I3L3R5 266 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 GRM8O00222 908 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 CAPN2P17655 700 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 MAGEA10P43363 369 aaPredicted RBP11.74□□□□□ -0.53
SYNE2-224ENST00000557024 LRIT3Q3SXY7 679 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 CAVIN4Q5BKX8 364 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 NOL9Q5SY16 702 aaKnown RBP11.74□□□□□ -0.53
SYNE2-224ENST00000557024 FAM151AQ8WW52 585 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 PHF12Q96QT6 1004 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 MRS2Q9HD23 443 aa11.74□□□□□ -0.53
SYNE2-224ENST00000557024 CXCL11O14625 94 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 GALR2O43603 387 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-224ENST00000557024 MAST3O60307 1309 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 IRF5Q13568 498 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 HHIPL2Q6UWX4 724 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 GADL1Q6ZQY3 521 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 MROH5Q6ZUA9 1318 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.73□□□□□ -0.53
SYNE2-224ENST00000557024 TDHQ8IZJ6 230 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 MRIQ9BWK5 157 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.73□□□□□ -0.53
SYNE2-224ENST00000557024 ZHX2Q9Y6X8 837 aa11.73□□□□□ -0.53
SYNE2-224ENST00000557024 A0A0G2JLL6 359 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-224ENST00000557024 NFIAQ12857 509 aa11.72□□□□□ -0.53
SYNE2-224ENST00000557024 CDC42EP5Q6NZY7 148 aa11.72□□□□□ -0.53
SYNE2-224ENST00000557024 FASTKD5Q7L8L6 764 aaKnown RBP11.72□□□□□ -0.53
SYNE2-224ENST00000557024 PRRT2Q7Z6L0 340 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-224ENST00000557024 SMCR8Q8TEV9 937 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-224ENST00000557024 UBE2OQ9C0C9 1292 aaKnown RBP11.72□□□□□ -0.53
SYNE2-224ENST00000557024 C9orf78Q9NZ63 289 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-224ENST00000557024 LRRC24Q50LG9 513 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 METTL24Q5JXM2 366 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 COA7Q96BR5 231 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 NBPF3Q9H094 633 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 PICK1Q9NRD5 415 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 FAM198AQ9UFP1 575 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 SUGT1Q9Y2Z0 365 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 DAGLAQ9Y4D2 1042 aa11.71□□□□□ -0.53
SYNE2-224ENST00000557024 PTPRAP18433 802 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 DIXDC1Q155Q3 683 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 WWC1Q8IX03 1113 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 ZFPM1Q8IX07 1006 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 SCYL3Q8IZE3 742 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 ANKRD13CQ8N6S4 541 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 ANKLE1Q8NAG6 615 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 SUCLG2Q96I99 432 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 MFRPQ9BY79 579 aa11.7□□□□□ -0.54
SYNE2-224ENST00000557024 RPTORQ8N122 1335 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 FANCIQ9NVI1 1328 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 TRIM75PA6NK02 468 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 PHF20L1A8MW92 1017 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 HMGCRP04035 888 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 TRIM32Q13049 653 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 NBR1Q14596 966 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 TPRNQ4KMQ1 711 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 VGLL2Q8N8G2 317 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 KAZALD1Q96I82 304 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 C11orf49Q9H6J7 331 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms