RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 KRI1Q8N9T8 703 aaKnown RBP17■□□□□ 0.31
CUX1-215ENST00000556210 RCOR1Q9UKL0 485 aa17■□□□□ 0.31
CUX1-215ENST00000556210 TRIM75PA6NK02 468 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 DNA2P51530 1060 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 LZTFL1Q9NQ48 299 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 USP42Q9H9J4 1324 aaKnown RBP16.99■□□□□ 0.31
CUX1-215ENST00000556210 CDC25AP30304 524 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 CCT6AP40227 531 aaKnown RBP16.99■□□□□ 0.31
CUX1-215ENST00000556210 CHRNDQ07001 517 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 HEATR3Q7Z4Q2 680 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 LINC00301Q8NCQ3 95 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 NOC3LQ8WTT2 800 aaKnown RBP16.99■□□□□ 0.31
CUX1-215ENST00000556210 CNNM2Q9H8M5 875 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 CCDC194A0A1B0GVG4 234 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 CTDNEP1O95476 244 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 ADD2P35612 726 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 EIF6P56537 245 aaKnown RBP16.99■□□□□ 0.31
CUX1-215ENST00000556210 CEP131Q9UPN4 1083 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 CAVIN2O95810 425 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 PICALMQ13492 652 aa16.99■□□□□ 0.31
CUX1-215ENST00000556210 GSDMDP57764 484 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 ARHGAP29Q52LW3 1261 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 TRIM34Q9BYJ4 488 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 KAT14Q9H8E8 782 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 LOC102724428A0A0B4J2F2 783 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 PATL2C9JE40 543 aaKnown RBP16.98■□□□□ 0.31
CUX1-215ENST00000556210 CASP1P29466 404 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 SIK1P57059 783 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 PIK3AP1Q6ZUJ8 805 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 BLZF1Q9H2G9 400 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 SERTAD1Q9UHV2 236 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 KCNQ2O43526 872 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 CDC27P30260 824 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 RFC4P35249 363 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 CDK5RAP3Q96JB5 506 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 FANCLQ9NW38 375 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 ELP1O95163 1332 aa16.98■□□□□ 0.31
CUX1-215ENST00000556210 ADKP55263 362 aaKnown RBP16.97■□□□□ 0.31
CUX1-215ENST00000556210 RRAGBQ5VZM2 374 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 NUP88Q99567 741 aaPredicted RBP16.97■□□□□ 0.31
CUX1-215ENST00000556210 DACH1Q9UI36 760 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 KIF28PB7ZC32 967 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 GPS2Q13227 327 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 SOGA3Q5TF21 947 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 SMYD4Q8IYR2 804 aaPredicted RBP16.97■□□□□ 0.31
CUX1-215ENST00000556210 NFE2L3Q9Y4A8 694 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 PCDHA5Q9Y5H7 936 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 N4BP3O15049 544 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 MYL5Q02045 173 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 TAF3Q5VWG9 929 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 ZNF710Q8N1W2 664 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 TMEM87BQ96K49 555 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 TANGO6Q9C0B7 1094 aa16.97■□□□□ 0.31
CUX1-215ENST00000556210 KIF2AO00139 706 aaPredicted RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 MEGF6O75095 1541 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 IDEP14735 1019 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 KIF23Q02241 960 aaPredicted RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 LRRC8AQ8IWT6 810 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 ZNF654Q8IZM8 581 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 KCNF1Q9H3M0 494 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 MED23Q9ULK4 1368 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 LONRF3Q496Y0 759 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 ZNF397Q8NF99 534 aaPredicted RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 SPTLC3Q9NUV7 552 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 RIMBP2O15034 1052 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 CIAO1O76071 339 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 SLU7O95391 586 aaKnown RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 EIF5P55010 431 aaKnown RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 ELF2Q15723 593 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 UTP14CQ5TAP6 766 aaKnown RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 TMCO3Q6UWJ1 677 aa16.96■□□□□ 0.31
CUX1-215ENST00000556210 CCDC47Q96A33 483 aaKnown RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 GPR101Q96P66 508 aaPredicted RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 CRNKL1Q9BZJ0 848 aaKnown RBP16.96■□□□□ 0.31
CUX1-215ENST00000556210 TNKSO95271 1327 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 UBA7P41226 1012 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 KIF4BQ2VIQ3 1234 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 MAGEC2Q9UBF1 373 aaPredicted RBP16.95■□□□□ 0.3
CUX1-215ENST00000556210 NEDD4P46934 1319 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 USP27XA6NNY8 438 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 DESI2Q9BSY9 194 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 ZNF215Q9UL58 517 aaPredicted RBP16.95■□□□□ 0.3
CUX1-215ENST00000556210 TSPY3P0CV98 308 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 TSPY8P0CW00 308 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 PDE4BQ07343 736 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 PPARAQ07869 468 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 CCDC12Q8WUD4 166 aaPredicted RBP16.95■□□□□ 0.3
CUX1-215ENST00000556210 GPR108Q9NPR9 543 aa16.95■□□□□ 0.3
CUX1-215ENST00000556210 KDM6AO15550 1401 aaPredicted RBP16.94■□□□□ 0.3
CUX1-215ENST00000556210 FDPSP14324 419 aaKnown RBP16.94■□□□□ 0.3
CUX1-215ENST00000556210 CAGE1Q8TC20 777 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 ISCA1Q9BUE6 129 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 VPS16Q9H269 839 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 RTEL1Q9NZ71 1219 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 DLG5Q8TDM6 1919 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 FAM170AA1A519 330 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 FOXN1O15353 648 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 GUCY1A2P33402 732 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 GTF2F1P35269 517 aaKnown RBP eCLIP16.94■□□□□ 0.32e-8■■■□□ 18.7
CUX1-215ENST00000556210 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms