RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 RNF186Q9NXI6 227 aa25.12■■□□□ 1.61
CCDC88C-210ENST00000555995 ATRNL1Q5VV63 1379 aa25.11■■□□□ 1.61
CCDC88C-210ENST00000555995 MKRN3Q13064 507 aaKnown RBP25.11■■□□□ 1.61
CCDC88C-210ENST00000555995 PICALMQ13492 652 aa25.11■■□□□ 1.61
CCDC88C-210ENST00000555995 TEX11Q8IYF3 940 aa25.11■■□□□ 1.61
CCDC88C-210ENST00000555995 TNS4Q8IZW8 715 aa25.11■■□□□ 1.61
CCDC88C-210ENST00000555995 OPTNQ96CV9 577 aa25.11■■□□□ 1.61
CCDC88C-210ENST00000555995 TRPA1O75762 1119 aa25.1■■□□□ 1.61
CCDC88C-210ENST00000555995 PPP4CP60510 307 aa25.1■■□□□ 1.61
CCDC88C-210ENST00000555995 OTUD7BQ6GQQ9 843 aa25.1■■□□□ 1.61
CCDC88C-210ENST00000555995 GPATCH3Q96I76 525 aa25.1■■□□□ 1.61
CCDC88C-210ENST00000555995 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.1■■□□□ 1.61
CCDC88C-210ENST00000555995 CDK5RAP2Q96SN8 1893 aa25.1■■□□□ 1.61
CCDC88C-210ENST00000555995 CRBNQ96SW2 442 aa25.09■■□□□ 1.61
CCDC88C-210ENST00000555995 SPDYE5A6NIY4 337 aa25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 ATP5JP18859 108 aa25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 CYP7A1P22680 504 aa25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 ERO1BQ86YB8 467 aa25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 DDX4Q9NQI0 724 aaKnown RBP25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 AATFQ9NY61 560 aaKnown RBP eCLIP25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 TSKSQ9UJT2 592 aa25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 ZNF112Q9UJU3 913 aa25.08■■□□□ 1.61
CCDC88C-210ENST00000555995 NOL9Q5SY16 702 aaKnown RBP25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 MIGA2Q7L4E1 593 aa25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 DNAJC2Q99543 621 aaKnown RBP25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 CFHR5Q9BXR6 569 aa25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 OSBPL5Q9H0X9 879 aaPredicted RBP25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 BCL11AQ9H165 835 aa25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 SNCAIPQ9Y6H5 919 aa25.07■■□□□ 1.6
CCDC88C-210ENST00000555995 GTF2A2P52657 109 aa25.06■■□□□ 1.6
CCDC88C-210ENST00000555995 MAGEB6Q8N7X4 407 aa25.06■■□□□ 1.6
CCDC88C-210ENST00000555995 DHX36Q9H2U1 1008 aaKnown RBP25.06■■□□□ 1.6
CCDC88C-210ENST00000555995 PCDHB15Q9Y5E8 787 aa25.06■■□□□ 1.6
CCDC88C-210ENST00000555995 MYH7P12883 1935 aa25.06■■□□□ 1.6
CCDC88C-210ENST00000555995 DOCK1Q14185 1865 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 MAP3K10Q02779 954 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 PPATQ06203 517 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 PPIL2Q13356 520 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 NOM1Q5C9Z4 860 aaKnown RBP25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 ZFPM1Q8IX07 1006 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 SH3RF3Q8TEJ3 882 aaPredicted RBP25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 ZKSCAN4Q969J2 545 aaPredicted RBP25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 OTUD5Q96G74 571 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 ANTXR1Q9H6X2 564 aa25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 ZBTB47Q9UFB7 747 aaPredicted RBP25.05■■□□□ 1.6
CCDC88C-210ENST00000555995 CASP8AP2Q9UKL3 1982 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 TESPA1A2RU30 521 aaPredicted RBP25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 DDTLA6NHG4 134 aaPredicted RBP25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 GOLIM4O00461 696 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 TBC1D12O60347 775 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 GJA5P36382 358 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 IFNL1Q8IU54 200 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 HAUS7Q99871 368 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 PAG1Q9NWQ8 432 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 NDUFB9Q9Y6M9 179 aa25.04■■□□□ 1.6
CCDC88C-210ENST00000555995 SH3BP5LQ7L8J4 393 aa25.03■■□□□ 1.6
CCDC88C-210ENST00000555995 ADGRA1Q86SQ6 560 aa25.03■■□□□ 1.6
CCDC88C-210ENST00000555995 ECHDC1Q9NTX5 307 aa25.03■■□□□ 1.6
CCDC88C-210ENST00000555995 SMARCA5O60264 1052 aaPredicted RBP25.02■■□□□ 1.6
CCDC88C-210ENST00000555995 INPP5BP32019 993 aa25.02■■□□□ 1.6
CCDC88C-210ENST00000555995 SNAPC2Q13487 334 aa25.02■■□□□ 1.6
CCDC88C-210ENST00000555995 SLC9C2Q5TAH2 1124 aa25.02■■□□□ 1.6
CCDC88C-210ENST00000555995 BOLA2Q9H3K6 86 aa25.02■■□□□ 1.6
CCDC88C-210ENST00000555995 HERC5Q9UII4 1024 aaKnown RBP25.02■■□□□ 1.6
CCDC88C-210ENST00000555995 CETPP11597 493 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 HDAC1Q13547 482 aaPredicted RBP25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 SCYL3Q8IZE3 742 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 TGFBRAP1Q8WUH2 860 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 GCC1Q96CN9 775 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 PICK1Q9NRD5 415 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 PI4KBQ9UBF8 816 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 MYH1P12882 1939 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 FLT1P17948 1338 aa25.01■■□□□ 1.59
CCDC88C-210ENST00000555995 CTNND1O60716 968 aaKnown RBP25■■□□□ 1.59
CCDC88C-210ENST00000555995 HLA-DOAP06340 250 aa25■■□□□ 1.59
CCDC88C-210ENST00000555995 PDE6AP16499 860 aa25■■□□□ 1.59
CCDC88C-210ENST00000555995 IFFO2Q5TF58 517 aa25■■□□□ 1.59
CCDC88C-210ENST00000555995 ZSCAN25Q6NSZ9 544 aa25■■□□□ 1.59
CCDC88C-210ENST00000555995 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25■■□□□ 1.59
CCDC88C-210ENST00000555995 ZCCHC17Q9NP64 241 aaKnown RBP25■■□□□ 1.59
CCDC88C-210ENST00000555995 CCL15-CCL14A0A0B4J2E2 113 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 USP5P45974 858 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 CCL15Q16663 113 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 TTC41PQ6P2S7 1318 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 MAPKAPK5Q8IW41 473 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 MIGA1Q8NAN2 632 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 MS4A4AQ96JQ5 239 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 TRIM34Q9BYJ4 488 aa24.99■■□□□ 1.59
CCDC88C-210ENST00000555995 MAGEB6P1A0A0J9YX57 407 aa24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 PHF20L1A8MW92 1017 aa24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 IGF2BP3O00425 579 aaKnown RBP eCLIP24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 ERC2O15083 957 aa24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 CNKSR2Q8WXI2 1034 aa24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 NAV1Q8NEY1 1877 aa24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 ATAD5Q96QE3 1844 aa24.98■■□□□ 1.59
CCDC88C-210ENST00000555995 IRF6O14896 467 aa24.97■■□□□ 1.59
CCDC88C-210ENST00000555995 TBC1D8O95759 1140 aa24.97■■□□□ 1.59
CCDC88C-210ENST00000555995 DYNLL1P63167 89 aaKnown RBP24.97■■□□□ 1.59
CCDC88C-210ENST00000555995 TBC1D2Q9BYX2 928 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms