RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 DIS3L2Q8IYB7 885 aaKnown RBP10.91□□□□□ -0.66
SYNE2-213ENST00000554805 NKX2-3Q8TAU0 364 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 TMEM87BQ96K49 555 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 ARMT1Q9H993 441 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 ST7Q9NRC1 585 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 FBXO3Q9UK99 471 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 POLR2DO15514 142 aaKnown RBP10.91□□□□□ -0.66
SYNE2-213ENST00000554805 PPP6R2O75170 966 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 SART3Q15020 963 aaKnown RBP10.91□□□□□ -0.66
SYNE2-213ENST00000554805 HLFQ16534 295 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 TEX35Q5T0J7 233 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 AEBP2Q6ZN18 517 aaPredicted RBP10.91□□□□□ -0.66
SYNE2-213ENST00000554805 MFSD6Q6ZSS7 791 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 WASF1Q92558 559 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 BTG4Q9NY30 223 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 NEDD4P46934 1319 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 SNAP23O00161 211 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 CASQ1P31415 396 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 ADKP55263 362 aaKnown RBP10.9□□□□□ -0.66
SYNE2-213ENST00000554805 MAP3K12Q12852 859 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 GRAMD1CQ8IYS0 662 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 CPLX3Q8WVH0 158 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 SMARCE1Q969G3 411 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 SERTAD1Q9UHV2 236 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 NFE2L3Q9Y4A8 694 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 POLR3GO15318 223 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-213ENST00000554805 RTN1Q16799 776 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 RESP18Q5W5W9 173 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 METTL16Q86W50 562 aaKnown RBP10.9□□□□□ -0.66
SYNE2-213ENST00000554805 TTLL11Q8NHH1 800 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 NBPF3Q9H094 633 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 TUBE1Q9UJT0 475 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 CPDO75976 1380 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 AFDNP55196 1824 aaKnown RBP10.9□□□□□ -0.66
SYNE2-213ENST00000554805 MINDY4BA8MYZ0 360 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 UQCRFS1P1P0C7P4 283 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 WTAPQ15007 396 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 KARSQ15046 597 aaKnown RBP10.9□□□□□ -0.66
SYNE2-213ENST00000554805 PTPAQ15257 358 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 VSTM4Q8IW00 320 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 BAG1Q99933 345 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-213ENST00000554805 NACAP1Q9BZK3 213 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 ZSWIM5Q9P217 1185 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 RIPOR2Q9Y4F9 1068 aa10.9□□□□□ -0.66
SYNE2-213ENST00000554805 RGPD5Q99666 1765 aa10.9□□□□□ -0.67
SYNE2-213ENST00000554805 LMTK3Q96Q04 1460 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 RANBP6O60518 1105 aaKnown RBP10.89□□□□□ -0.67
SYNE2-213ENST00000554805 TUBB4AP04350 444 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 CLCN6P51797 869 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 CTSWP56202 376 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 PDE4BQ07343 736 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 UBE3CQ15386 1083 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 NOSTRINQ8IVI9 506 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 MPHOSPH8Q99549 860 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 WDR17Q8IZU2 1322 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 STX17P56962 302 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 POSTNQ15063 836 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 IFNL3Q8IZI9 196 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 MIGA1Q8NAN2 632 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 STRBPQ96SI9 672 aaKnown RBP10.89□□□□□ -0.67
SYNE2-213ENST00000554805 NOL10Q9BSC4 688 aaKnown RBP10.89□□□□□ -0.67
SYNE2-213ENST00000554805 ZSWIM4Q9H7M6 989 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 L2HGDHQ9H9P8 463 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 DACH1Q9UI36 760 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 IQSEC3Q9UPP2 1182 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-213ENST00000554805 SPATA31A3Q5VYP0 1347 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 UBN2Q6ZU65 1347 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 PRKAB2O43741 272 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 PDE8BO95263 885 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 CSF1RP07333 972 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 GUCY1A2P33402 732 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 AFMP43652 599 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 TERF2Q15554 542 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 NLRP10Q86W26 655 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 FOXP4Q8IVH2 680 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-213ENST00000554805 CCDC34Q96HJ3 373 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 LY9Q9HBG7 655 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 LRP2BPQ9P2M1 347 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 HPSEQ9Y251 543 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 PPP2R2CQ9Y2T4 447 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 SLC4A4Q9Y6R1 1079 aa10.89□□□□□ -0.67
SYNE2-213ENST00000554805 WDR19Q8NEZ3 1342 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 SLC5A1P13866 664 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 GRIN1Q05586 938 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 GIGYF2Q6Y7W6 1299 aaKnown RBP10.88□□□□□ -0.67
SYNE2-213ENST00000554805 IGDCC4Q8TDY8 1250 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 UBAC1Q9BSL1 405 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 DESI2Q9BSY9 194 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 TEX13AQ9BXU3 409 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-213ENST00000554805 MAN1B1Q9UKM7 699 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 ADAMTSL3P82987 1691 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 PATL2C9JE40 543 aaKnown RBP10.88□□□□□ -0.67
SYNE2-213ENST00000554805 UBAP1LF5GYI3 381 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 ARHGAP6O43182 974 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 SLFN14P0C7P3 912 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 NR5A1Q13285 461 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 DHX58Q96C10 678 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 EPC1Q9H2F5 836 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 CABP5Q9NP86 173 aa10.88□□□□□ -0.67
SYNE2-213ENST00000554805 MAP3K15Q6ZN16 1313 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms