RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 ENTPD3O75355 529 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 BAG3O95817 575 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 MLLT1Q03111 559 aaPredicted RBP13□□□□□ -0.33
SHMT2-213ENST00000554600 TEX11Q8IYF3 940 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13□□□□□ -0.338e-7■■□□□ 11.7
SHMT2-213ENST00000554600 ZKSCAN4Q969J2 545 aaPredicted RBP13□□□□□ -0.33
SHMT2-213ENST00000554600 OPTNQ96CV9 577 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 OTUD5Q96G74 571 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 ABHD8Q96I13 439 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 DNAJC2Q99543 621 aaKnown RBP13□□□□□ -0.33
SHMT2-213ENST00000554600 IDI2Q9BXS1 227 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 LRRCC1Q9C099 1032 aa13□□□□□ -0.33
SHMT2-213ENST00000554600 AATFQ9NY61 560 aaKnown RBP eCLIP13□□□□□ -0.33
SHMT2-213ENST00000554600 SMARCA5O60264 1052 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-213ENST00000554600 WDHD1O75717 1129 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-213ENST00000554600 CYP7A1P22680 504 aa12.99□□□□□ -0.33
SHMT2-213ENST00000554600 TM4SF4P48230 202 aa12.99□□□□□ -0.33
SHMT2-213ENST00000554600 CNKSR2Q8WXI2 1034 aa12.99□□□□□ -0.33
SHMT2-213ENST00000554600 CRBNQ96SW2 442 aa12.99□□□□□ -0.33
SHMT2-213ENST00000554600 DDX4Q9NQI0 724 aaKnown RBP12.99□□□□□ -0.33
SHMT2-213ENST00000554600 PTPRFP10586 1907 aa12.99□□□□□ -0.33
SHMT2-213ENST00000554600 NAV1Q8NEY1 1877 aa12.99□□□□□ -0.33
SHMT2-213ENST00000554600 BAZ2AQ9UIF9 1905 aaKnown RBP12.98□□□□□ -0.33
SHMT2-213ENST00000554600 TBC1D8O95759 1140 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 PLCG2P16885 1265 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 INPP5BP32019 993 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 GJA5P36382 358 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 INHBEP58166 350 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 RHBDL3P58872 404 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 MAP3K12Q12852 859 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 MAGEB6Q8N7X4 407 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 SH3RF3Q8TEJ3 882 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-213ENST00000554600 ANTXR1Q9H6X2 564 aa12.98□□□□□ -0.33
SHMT2-213ENST00000554600 PHIPQ8WWQ0 1821 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 RFX7Q2KHR2 1363 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 DDTLA6NHG4 134 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-213ENST00000554600 GOLIM4O00461 696 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 MAP4K4O95819 1239 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-213ENST00000554600 TTF1Q15361 905 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-213ENST00000554600 OTUD7BQ6GQQ9 843 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 ERO1BQ86YB8 467 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 MIGA1Q8NAN2 632 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 SNCAIPQ9Y6H5 919 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 SIPA1L1O43166 1804 aa12.97□□□□□ -0.33
SHMT2-213ENST00000554600 CCL15-CCL14A0A0B4J2E2 113 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 SPDYE5A6NIY4 337 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 ALDH1A1P00352 501 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 GTF2A2P52657 109 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 DYNLL1P63167 89 aaKnown RBP12.96□□□□□ -0.33
SHMT2-213ENST00000554600 CCL15Q16663 113 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 SH3BP5LQ7L8J4 393 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 ADGRA1Q86SQ6 560 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 IFNL1Q8IU54 200 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 MAPKAPK5Q8IW41 473 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 BOLA2Q9H3K6 86 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 DCTPP1Q9H773 170 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 PCDHB15Q9Y5E8 787 aa12.96□□□□□ -0.33
SHMT2-213ENST00000554600 IGF2BP3O00425 579 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHMT2-213ENST00000554600 DGKZQ13574 1117 aa12.95□□□□□ -0.34
SHMT2-213ENST00000554600 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHMT2-213ENST00000554600 TGFBRAP1Q8WUH2 860 aa12.95□□□□□ -0.34
SHMT2-213ENST00000554600 OSBPL5Q9H0X9 879 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-213ENST00000554600 ZBTB47Q9UFB7 747 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-213ENST00000554600 FAM196BA6NMK8 535 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 IGSF3O75054 1194 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 NPM3O75607 178 aaKnown RBP12.94□□□□□ -0.34
SHMT2-213ENST00000554600 SLURP2P0DP57 97 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 USP5P45974 858 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 PPP4CP60510 307 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 PPIL2Q13356 520 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 SNAPC2Q13487 334 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 SLC4A8Q2Y0W8 1093 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 SLC9C2Q5TAH2 1124 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 EDC3Q96F86 508 aaKnown RBP12.94□□□□□ -0.34
SHMT2-213ENST00000554600 GPATCH3Q96I76 525 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 TRIM34Q9BYJ4 488 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHMT2-213ENST00000554600 PICK1Q9NRD5 415 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 PAG1Q9NWQ8 432 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 SAP30BPQ9UHR5 308 aaKnown RBP12.94□□□□□ -0.34
SHMT2-213ENST00000554600 ZNF112Q9UJU3 913 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 ATRNL1Q5VV63 1379 aa12.94□□□□□ -0.34
SHMT2-213ENST00000554600 COL2A1P02458 1487 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-213ENST00000554600 GPR25O00155 361 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 IRF6O14896 467 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 CETPP11597 493 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 PDE6AP16499 860 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 ATP5JP18859 108 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 PPATQ06203 517 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 TAF1CQ15572 869 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-213ENST00000554600 CRACR2BQ8N4Y2 399 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-213ENST00000554600 ZNF296Q8WUU4 475 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-213ENST00000554600 BRI3BPQ8WY22 251 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 MS4A4AQ96JQ5 239 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 MCOLN1Q9GZU1 580 aa12.93□□□□□ -0.34
SHMT2-213ENST00000554600 FLT1P17948 1338 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 MAGEB6P1A0A0J9YX57 407 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 FKTNO75072 461 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 NOL9Q5SY16 702 aaKnown RBP12.92□□□□□ -0.34
SHMT2-213ENST00000554600 CERS3Q8IU89 383 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms