RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.82□□□□□ -0.68
SIX4-202ENST00000554079 FTOQ9C0B1 505 aaKnown RBP eCLIP10.82□□□□□ -0.68
SIX4-202ENST00000554079 ACTR5Q9H9F9 607 aaPredicted RBP10.82□□□□□ -0.68
SIX4-202ENST00000554079 SPG7Q9UQ90 795 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 TRPC6Q9Y210 931 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 AGLP35573 1532 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 LAMA4Q16363 1823 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 ECEL1O95672 775 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 ATP5JP18859 108 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 PIP4K2BP78356 416 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 PTPN21Q16825 1174 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 SPATA21Q7Z572 469 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 RASSF8Q8NHQ8 419 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 PI4K2BQ8TCG2 481 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 BRF1Q92994 677 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 SCLT1Q96NL6 688 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 FMNL2Q96PY5 1086 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 STK31Q9BXU1 1019 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 EBF2Q9HAK2 575 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.82□□□□□ -0.68
SIX4-202ENST00000554079 PCDHGC5Q9Y5F6 944 aa10.82□□□□□ -0.68
SIX4-202ENST00000554079 ADGRF5Q8IZF2 1346 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 A0A0U1RQJ8 604 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 ERICH2A1L162 156 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 A6NNZ2 444 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 GOLGA8KD6RF30 607 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 PES1O00541 588 aaKnown RBP10.81□□□□□ -0.68
SIX4-202ENST00000554079 KDM6AO15550 1401 aaPredicted RBP10.81□□□□□ -0.68
SIX4-202ENST00000554079 ABCD1P33897 745 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 PDCLQ13371 301 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 MTX1Q13505 466 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 MTF1Q14872 753 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 TUBB8Q3ZCM7 444 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 ARHGEF25Q86VW2 580 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 ATRIPQ8WXE1 791 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 TBC1D5Q92609 795 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 ACSBG1Q96GR2 724 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 FANCLQ9NW38 375 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 ANAPC4Q9UJX5 808 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 CORO1CQ9ULV4 474 aaPredicted RBP10.81□□□□□ -0.68
SIX4-202ENST00000554079 PPLO60437 1756 aa10.81□□□□□ -0.68
SIX4-202ENST00000554079 CTAGE9A4FU28 777 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SPDYE3A6NKU9 549 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 ZSCAN9O15535 394 aaPredicted RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 KIF5CO60282 957 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 RAB11FIP3O75154 756 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 CCDC175P0C221 793 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 MCM3P25205 808 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 AMPD2Q01433 879 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 CEBPZQ03701 1054 aaKnown RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 IFFO1Q0D2I5 559 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 LAMB3Q13751 1172 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 NECTIN1Q15223 517 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 CFAP100Q494V2 611 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 RNF187Q5TA31 235 aaPredicted RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 HHATQ5VTY9 493 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SLC35F6Q8N357 371 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SMARCC2Q8TAQ2 1214 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 DDX54Q8TDD1 881 aaKnown RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 ZNF473Q8WTR7 871 aaKnown RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 PHACTR3Q96KR7 559 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 PLEKHG4BQ96PX9 1271 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 OSBPL9Q96SU4 736 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SELENOOQ9BVL4 669 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 ALDH8A1Q9H2A2 487 aaPredicted RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 KDM4CQ9H3R0 1056 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 BLOC1S6Q9UL45 172 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 ADGRG1Q9Y653 693 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 ZFYVE9O95405 1425 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 GOLGA6L7A0A1B0GV03 622 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 GOLGA6BA6NDN3 693 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 MGRN1O60291 552 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 JAK2O60674 1132 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 CDKL5O76039 1030 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SERPINC1P01008 464 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SLC4A2P04920 1241 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 HDGFP51858 240 aaKnown RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 ZNF569Q5MCW4 686 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 CCDC181Q5TID7 509 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 CCDC148Q8NFR7 591 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 B4GALNT2Q8NHY0 566 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 MRPS27Q92552 414 aaKnown RBP10.8□□□□□ -0.68
SIX4-202ENST00000554079 MKL1Q969V6 931 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 USP28Q96RU2 1077 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 SLX1AQ9BQ83 275 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 LZTFL1Q9NQ48 299 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 HAUS2Q9NVX0 235 aa10.8□□□□□ -0.68
SIX4-202ENST00000554079 TARSL2A2RTX5 802 aaKnown RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 LIN7AO14910 233 aaPredicted RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 SSBP05455 408 aaKnown RBP eCLIP10.79□□□□□ -0.68
SIX4-202ENST00000554079 LINGO3P0C6S8 592 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 SETSIPP0DME0 302 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 EPB41P11171 864 aaKnown RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 GCLCP48506 637 aaPredicted RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 TOB2Q14106 344 aaPredicted RBP10.79□□□□□ -0.68
SIX4-202ENST00000554079 SPRED3Q2MJR0 410 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 SLC30A9Q6PML9 568 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 TRIM58Q8NG06 486 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 NSMCE1Q8WV22 266 aa10.79□□□□□ -0.68
SIX4-202ENST00000554079 CCDC47Q96A33 483 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms