RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ATRNO75882 1429 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 TAF1P21675 1872 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 GRIN1Q05586 938 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 DMTNQ08495 405 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 GNL2Q13823 731 aaKnown RBP8.67□□□□□ -1.02
LIMA1-213ENST00000552720 LONRF3Q496Y0 759 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 NFXL1Q6ZNB6 911 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 METTL16Q86W50 562 aaKnown RBP8.67□□□□□ -1.02
LIMA1-213ENST00000552720 FOXP4Q8IVH2 680 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-213ENST00000552720 CHMP4CQ96CF2 233 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 PPP1R13BQ96KQ4 1090 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 STRBPQ96SI9 672 aaKnown RBP8.67□□□□□ -1.02
LIMA1-213ENST00000552720 LY9Q9HBG7 655 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 ZSWIM5Q9P217 1185 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 BAZ2BQ9UIF8 2168 aaKnown RBP8.67□□□□□ -1.02
LIMA1-213ENST00000552720 HPSEQ9Y251 543 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 LRP6O75581 1613 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 ABCC12Q96J65 1359 aa8.67□□□□□ -1.02
LIMA1-213ENST00000552720 GOLGA8AA7E2F4 631 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 TMEM232C9JQI7 657 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 ZBTB43O43298 467 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 PRKAB2O43741 272 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 IARSP41252 1262 aaKnown RBP8.66□□□□□ -1.02
LIMA1-213ENST00000552720 GSDMDP57764 484 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 ELF2Q15723 593 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 KMT5BQ4FZB7 885 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 SYT10Q6XYQ8 523 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 MAGEB6Q8N7X4 407 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 AIDAQ96BJ3 306 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 SLC26A6Q9BXS9 759 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 ARMT1Q9H993 441 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 PODXL2Q9NZ53 605 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 BAZ2AQ9UIF9 1905 aaKnown RBP8.66□□□□□ -1.02
LIMA1-213ENST00000552720 ARAP2Q8WZ64 1704 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 WDR19Q8NEZ3 1342 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 CDHR2Q9BYE9 1310 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 SMIM22K7EJ46 135 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 MBD4O95243 580 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 STARD3NLO95772 234 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 BMP6P22004 513 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 SFPQP23246 707 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMA1-213ENST00000552720 PDE4BQ07343 736 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 UBE3CQ15386 1083 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 SYCP1Q15431 976 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 TMEM67Q5HYA8 995 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 RRP12Q5JTH9 1297 aaKnown RBP8.66□□□□□ -1.02
LIMA1-213ENST00000552720 TUBE1Q9UJT0 475 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 KCNJ14Q9UNX9 436 aa8.66□□□□□ -1.02
LIMA1-213ENST00000552720 BTBD18B2RXH4 712 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 IFNL3Q8IZI9 196 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 KIF18AQ8NI77 898 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 IMPACTQ9P2X3 320 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 BCORQ6W2J9 1755 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 SOS2Q07890 1332 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 NHSL1Q5SYE7 1610 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 IFIT3O14879 490 aaKnown RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 PPP6R2O75170 966 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 CYP19A1P11511 503 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 ARID4AP29374 1257 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 TOB1P50616 345 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 RASGRF1Q13972 1273 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 TTF1Q15361 905 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 RESP18Q5W5W9 173 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 FBXO38Q6PIJ6 1188 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 SEC31BQ9NQW1 1179 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 TOMM22Q9NS69 142 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 FANCLQ9NW38 375 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 CGNQ9P2M7 1197 aaKnown RBP8.65□□□□□ -1.02
LIMA1-213ENST00000552720 PCDHA5Q9Y5H7 936 aa8.65□□□□□ -1.02
LIMA1-213ENST00000552720 COL4A1P02462 1669 aa8.65□□□□□ -1.03
LIMA1-213ENST00000552720 FANCGO15287 622 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 SERPINC1P01008 464 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 UBASH3AP57075 661 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 C1QBPQ07021 282 aaKnown RBP8.64□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF827Q17R98 1081 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 GRAMD1CQ8IYS0 662 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 SPATA5Q8NB90 893 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 CCDC150Q8NCX0 1101 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 NAPBQ9H115 298 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 DDX41Q9UJV9 622 aaKnown RBP8.64□□□□□ -1.03
LIMA1-213ENST00000552720 GSG1L2A8MUP6 293 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 IKBKBO14920 756 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 PDE8AO60658 829 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 CDKL5O76039 1030 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 SLU7O95391 586 aaKnown RBP8.64□□□□□ -1.03
LIMA1-213ENST00000552720 PRR29P0C7W0 189 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 ATP2B1P20020 1258 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 FGFR2P21802 821 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 NR5A1Q13285 461 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 TRIM29Q14134 588 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 ERCC6LQ2NKX8 1250 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 CFAP100Q494V2 611 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 KRBA2Q6ZNG9 492 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 SGMS1Q86VZ5 419 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 LCORLQ8N3X6 602 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 MIGA1Q8NAN2 632 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 CNNM3Q8NE01 707 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 TMEM87BQ96K49 555 aa8.64□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF512BQ96KM6 892 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms