RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 BICC1Q9H694 974 aaKnown RBP16.05■□□□□ 0.16
SCAF11-208ENST00000546534 CXCL11O14625 94 aa16.04■□□□□ 0.16
SCAF11-208ENST00000546534 ELNP15502 786 aa16.04■□□□□ 0.16
SCAF11-208ENST00000546534 STAP2Q9UGK3 403 aa16.04■□□□□ 0.16
SCAF11-208ENST00000546534 SALL2Q9Y467 1007 aaPredicted RBP16.04■□□□□ 0.16
SCAF11-208ENST00000546534 TFRCP02786 760 aaKnown RBP16.03■□□□□ 0.16
SCAF11-208ENST00000546534 FLT3LGP49771 235 aa16.03■□□□□ 0.16
SCAF11-208ENST00000546534 NFIAQ12857 509 aa16.03■□□□□ 0.16
SCAF11-208ENST00000546534 RABL6Q3YEC7 729 aaPredicted RBP16.03■□□□□ 0.16
SCAF11-208ENST00000546534 CDC42EP5Q6NZY7 148 aa16.03■□□□□ 0.16
SCAF11-208ENST00000546534 WDR63Q8IWG1 891 aa16.03■□□□□ 0.16
SCAF11-208ENST00000546534 ANKRD44Q8N8A2 993 aa16.03■□□□□ 0.16
SCAF11-208ENST00000546534 DAGLAQ9Y4D2 1042 aa16.03■□□□□ 0.16
SCAF11-208ENST00000546534 UTYO14607 1347 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 INHAP05111 366 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 FGFR2P21802 821 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 DIXDC1Q155Q3 683 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 KLHDC4Q8TBB5 520 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 DEFB118Q96PH6 123 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 FAM198AQ9UFP1 575 aa16.02■□□□□ 0.16
SCAF11-208ENST00000546534 KIF16BQ96L93 1317 aa16.01■□□□□ 0.15
SCAF11-208ENST00000546534 IFIT1P09914 478 aaKnown RBP16.01■□□□□ 0.15
SCAF11-208ENST00000546534 ZFPM1Q8IX07 1006 aa16.01■□□□□ 0.15
SCAF11-208ENST00000546534 WDR66Q8TBY9 1149 aa16.01■□□□□ 0.15
SCAF11-208ENST00000546534 PXYLP1Q8TE99 480 aa16.01■□□□□ 0.15
SCAF11-208ENST00000546534 A0A0G2JLL6 359 aaPredicted RBP16■□□□□ 0.15
SCAF11-208ENST00000546534 PUM3Q15397 648 aaKnown RBP16■□□□□ 0.15
SCAF11-208ENST00000546534 FASTKD5Q7L8L6 764 aaKnown RBP16■□□□□ 0.15
SCAF11-208ENST00000546534 PRRT2Q7Z6L0 340 aaPredicted RBP16■□□□□ 0.15
SCAF11-208ENST00000546534 PAWRQ96IZ0 340 aaKnown RBP16■□□□□ 0.15
SCAF11-208ENST00000546534 ZHX2Q9Y6X8 837 aa16■□□□□ 0.15
SCAF11-208ENST00000546534 PHF20L1A8MW92 1017 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 TNPO2O14787 897 aaKnown RBP15.99■□□□□ 0.15
SCAF11-208ENST00000546534 CAPN2P17655 700 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 PTPRAP18433 802 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 PRDX5P30044 214 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 IRF5Q13568 498 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 GADL1Q6ZQY3 521 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 SCYL3Q8IZE3 742 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 CRISPLD2Q9H0B8 497 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 PAK6Q9NQU5 681 aaPredicted RBP15.99■□□□□ 0.15
SCAF11-208ENST00000546534 USP40Q9NVE5 1235 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 ATRNL1Q5VV63 1379 aa15.99■□□□□ 0.15
SCAF11-208ENST00000546534 MGAMO43451 1857 aa15.98■□□□□ 0.15
SCAF11-208ENST00000546534 ZEB1P37275 1124 aaPredicted RBP15.98■□□□□ 0.15
SCAF11-208ENST00000546534 DIS3LQ8TF46 1054 aaKnown RBP15.98■□□□□ 0.15
SCAF11-208ENST00000546534 GDF15Q99988 308 aa15.98■□□□□ 0.15
SCAF11-208ENST00000546534 PICK1Q9NRD5 415 aa15.98■□□□□ 0.15
SCAF11-208ENST00000546534 TAOK2Q9UL54 1235 aa15.98■□□□□ 0.15
SCAF11-208ENST00000546534 AFG3L2Q9Y4W6 797 aa15.98■□□□□ 0.15
SCAF11-208ENST00000546534 SLC5A1P13866 664 aa15.97■□□□□ 0.15
SCAF11-208ENST00000546534 SMCR8Q8TEV9 937 aaPredicted RBP15.97■□□□□ 0.15
SCAF11-208ENST00000546534 LPIN2Q92539 896 aa15.97■□□□□ 0.15
SCAF11-208ENST00000546534 SLC45A1Q9Y2W3 748 aa15.97■□□□□ 0.15
SCAF11-208ENST00000546534 LDHBP07195 334 aaKnown RBP15.96■□□□□ 0.15
SCAF11-208ENST00000546534 BMP8BP34820 402 aa15.96■□□□□ 0.15
SCAF11-208ENST00000546534 SH3BP5LQ7L8J4 393 aa15.96■□□□□ 0.15
SCAF11-208ENST00000546534 NECAB2Q7Z6G3 386 aa15.96■□□□□ 0.15
SCAF11-208ENST00000546534 C7orf61Q8IZ16 206 aa15.96■□□□□ 0.15
SCAF11-208ENST00000546534 EYA2O00167 538 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 SLURP2P0DP57 97 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 RGS3P49796 1198 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 GSE1Q14687 1217 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 DEFB123Q8N688 67 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 ANKRD13CQ8N6S4 541 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 COA7Q96BR5 231 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.95■□□□□ 0.14
SCAF11-208ENST00000546534 ZMYND8Q9ULU4 1186 aaPredicted RBP15.95■□□□□ 0.14
SCAF11-208ENST00000546534 AK9Q5TCS8 1911 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 LAMA3Q16787 3333 aa15.95■□□□□ 0.14
SCAF11-208ENST00000546534 CUL9Q8IWT3 2517 aa15.94■□□□□ 0.14
SCAF11-208ENST00000546534 TRIM75PA6NK02 468 aa15.94■□□□□ 0.14
SCAF11-208ENST00000546534 RFX5P48382 616 aaPredicted RBP15.94■□□□□ 0.14
SCAF11-208ENST00000546534 MAP3K10Q02779 954 aa15.94■□□□□ 0.14
SCAF11-208ENST00000546534 GPR153Q6NV75 609 aa15.94■□□□□ 0.14
SCAF11-208ENST00000546534 Q7L0L9 218 aa15.94■□□□□ 0.14
SCAF11-208ENST00000546534 ZSCAN29Q8IWY8 852 aaPredicted RBP15.94■□□□□ 0.14
SCAF11-208ENST00000546534 IDI2Q9BXS1 227 aa15.94■□□□□ 0.14
SCAF11-208ENST00000546534 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.94■□□□□ 0.14
SCAF11-208ENST00000546534 CIZ1Q9ULV3 898 aaPredicted RBP15.94■□□□□ 0.14
SCAF11-208ENST00000546534 LRRFIP2Q9Y608 721 aaKnown RBP15.94■□□□□ 0.14
SCAF11-208ENST00000546534 COL6A3P12111 3177 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 DDTLA6NHG4 134 aaPredicted RBP15.93■□□□□ 0.14
SCAF11-208ENST00000546534 CTNND1O60716 968 aaKnown RBP15.93■□□□□ 0.14
SCAF11-208ENST00000546534 ENTPD3O75355 529 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 ATG9AQ7Z3C6 839 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 CCDC84Q86UT8 332 aaPredicted RBP15.93■□□□□ 0.14
SCAF11-208ENST00000546534 USP44Q9H0E7 712 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 AGTPBP1Q9UPW5 1226 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 ALPK3Q96L96 1907 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 SALL1Q9NSC2 1324 aa15.93■□□□□ 0.14
SCAF11-208ENST00000546534 SYN1P17600 705 aa15.92■□□□□ 0.14
SCAF11-208ENST00000546534 TREML2Q5T2D2 321 aa15.92■□□□□ 0.14
SCAF11-208ENST00000546534 RASEFQ8IZ41 740 aa15.92■□□□□ 0.14
SCAF11-208ENST00000546534 ANKLE1Q8NAG6 615 aa15.92■□□□□ 0.14
SCAF11-208ENST00000546534 FAM212AQ96EL1 285 aa15.92■□□□□ 0.14
SCAF11-208ENST00000546534 RFX7Q2KHR2 1363 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 HMGCRP04035 888 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 TRIM32Q13049 653 aa15.91■□□□□ 0.14
SCAF11-208ENST00000546534 FAM110CQ1W6H9 321 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms