RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 AFG3L2Q9Y4W6 797 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 ATAD5Q96QE3 1844 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 A0A0C4DFX4 3053 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 LOC285556D6RIA3 1793 aa16.08■□□□□ 0.17
USP28-212ENST00000544750 PLXNB2O15031 1838 aa16.08■□□□□ 0.17
USP28-212ENST00000544750 EYA2O00167 538 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 ZBTB22O15209 634 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 CAPN2P17655 700 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 PTPRAP18433 802 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 FLT3LGP49771 235 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 IRF5Q13568 498 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 MRPL50Q8N5N7 158 aaKnown RBP16.08■□□□□ 0.16
USP28-212ENST00000544750 MRS2Q9HD23 443 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 PAK6Q9NQU5 681 aaPredicted RBP16.08■□□□□ 0.16
USP28-212ENST00000544750 SALL1Q9NSC2 1324 aa16.08■□□□□ 0.16
USP28-212ENST00000544750 INHAP05111 366 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 SLC5A1P13866 664 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 ELNP15502 786 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 SH3BP5LQ7L8J4 393 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 FASTKD5Q7L8L6 764 aaKnown RBP16.07■□□□□ 0.16
USP28-212ENST00000544750 SCYL3Q8IZE3 742 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 IDI2Q9BXS1 227 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 CRISPLD2Q9H0B8 497 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 USP40Q9NVE5 1235 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 ZHX2Q9Y6X8 837 aa16.07■□□□□ 0.16
USP28-212ENST00000544750 GAKO14976 1311 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 PTPRCP08575 1304 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 ZNF521Q96K83 1311 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 DLL1O00548 723 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 ENTPD3O75355 529 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 LDHBP07195 334 aaKnown RBP16.05■□□□□ 0.16
USP28-212ENST00000544750 SLURP2P0DP57 97 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 RGS3P49796 1198 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 SLC17A8Q8NDX2 589 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 LRCH3Q96II8 777 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 DEFB118Q96PH6 123 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 CUL9Q8IWT3 2517 aa16.05■□□□□ 0.16
USP28-212ENST00000544750 EVI5O60447 810 aa16.04■□□□□ 0.16
USP28-212ENST00000544750 STAP2Q9UGK3 403 aa16.04■□□□□ 0.16
USP28-212ENST00000544750 DDX60LQ5H9U9 1706 aaKnown RBP16.04■□□□□ 0.16
USP28-212ENST00000544750 DDTLA6NHG4 134 aaPredicted RBP16.03■□□□□ 0.16
USP28-212ENST00000544750 TNPO2O14787 897 aaKnown RBP16.03■□□□□ 0.16
USP28-212ENST00000544750 TFRCP02786 760 aaKnown RBP16.03■□□□□ 0.16
USP28-212ENST00000544750 GADL1Q6ZQY3 521 aa16.03■□□□□ 0.16
USP28-212ENST00000544750 PAWRQ96IZ0 340 aaKnown RBP16.03■□□□□ 0.16
USP28-212ENST00000544750 GDF15Q99988 308 aa16.03■□□□□ 0.16
USP28-212ENST00000544750 DDX4Q9NQI0 724 aaKnown RBP16.03■□□□□ 0.16
USP28-212ENST00000544750 PICK1Q9NRD5 415 aa16.03■□□□□ 0.16
USP28-212ENST00000544750 FBXO3Q9UK99 471 aa16.03■□□□□ 0.16
USP28-212ENST00000544750 SEMA3EO15041 775 aa16.02■□□□□ 0.16
USP28-212ENST00000544750 CTNND1O60716 968 aaKnown RBP16.02■□□□□ 0.16
USP28-212ENST00000544750 BMP8BP34820 402 aa16.02■□□□□ 0.16
USP28-212ENST00000544750 PHKA1P46020 1223 aa16.02■□□□□ 0.16
USP28-212ENST00000544750 ATP2B3Q16720 1220 aa16.02■□□□□ 0.16
USP28-212ENST00000544750 DIS3LQ8TF46 1054 aaKnown RBP16.02■□□□□ 0.16
USP28-212ENST00000544750 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.02■□□□□ 0.16
USP28-212ENST00000544750 DENND2AQ9ULE3 1009 aa16.02■□□□□ 0.16
USP28-212ENST00000544750 CIAO1O76071 339 aa16.01■□□□□ 0.15
USP28-212ENST00000544750 MNX1P50219 401 aaPredicted RBP16.01■□□□□ 0.15
USP28-212ENST00000544750 FAM110CQ1W6H9 321 aa16.01■□□□□ 0.15
USP28-212ENST00000544750 FAM163AQ96GL9 167 aaPredicted RBP16.01■□□□□ 0.15
USP28-212ENST00000544750 GNL3LQ9NVN8 582 aaKnown RBP16.01■□□□□ 0.15
USP28-212ENST00000544750 AGTPBP1Q9UPW5 1226 aa16.01■□□□□ 0.15
USP28-212ENST00000544750 SIPA1L1O43166 1804 aa16.01■□□□□ 0.15
USP28-212ENST00000544750 TREML2Q5T2D2 321 aa16■□□□□ 0.15
USP28-212ENST00000544750 GPR153Q6NV75 609 aa16■□□□□ 0.15
USP28-212ENST00000544750 NECAB2Q7Z6G3 386 aa16■□□□□ 0.15
USP28-212ENST00000544750 CCDC84Q86UT8 332 aaPredicted RBP16■□□□□ 0.15
USP28-212ENST00000544750 ANKRD13CQ8N6S4 541 aa16■□□□□ 0.15
USP28-212ENST00000544750 ANKLE1Q8NAG6 615 aa16■□□□□ 0.15
USP28-212ENST00000544750 SMCR8Q8TEV9 937 aaPredicted RBP16■□□□□ 0.15
USP28-212ENST00000544750 SSH1Q8WYL5 1049 aa16■□□□□ 0.15
USP28-212ENST00000544750 XRN2Q9H0D6 950 aaKnown RBP eCLIP16■□□□□ 0.15
USP28-212ENST00000544750 LRRFIP2Q9Y608 721 aaKnown RBP16■□□□□ 0.15
USP28-212ENST00000544750 CDK5RAP2Q96SN8 1893 aa15.99■□□□□ 0.15
USP28-212ENST00000544750 TRIM75PA6NK02 468 aa15.99■□□□□ 0.15
USP28-212ENST00000544750 TBC1D12O60347 775 aa15.99■□□□□ 0.15
USP28-212ENST00000544750 COA7Q96BR5 231 aa15.99■□□□□ 0.15
USP28-212ENST00000544750 CEP126Q9P2H0 1117 aa15.99■□□□□ 0.15
USP28-212ENST00000544750 GJD2Q9UKL4 321 aa15.99■□□□□ 0.15
USP28-212ENST00000544750 PDS5AQ29RF7 1337 aaKnown RBP15.98■□□□□ 0.15
USP28-212ENST00000544750 NPM3O75607 178 aaKnown RBP15.98■□□□□ 0.15
USP28-212ENST00000544750 ADORA1P30542 326 aa15.98■□□□□ 0.15
USP28-212ENST00000544750 RHBDL3P58872 404 aa15.98■□□□□ 0.15
USP28-212ENST00000544750 CCDC102BQ68D86 513 aa15.98■□□□□ 0.15
USP28-212ENST00000544750 ZGPATQ8N5A5 531 aaKnown RBP15.98■□□□□ 0.15
USP28-212ENST00000544750 PROCA1Q8NCQ7 364 aaPredicted RBP15.98■□□□□ 0.15
USP28-212ENST00000544750 ZNF384Q8TF68 577 aa15.98■□□□□ 0.15
USP28-212ENST00000544750 SIL1Q9H173 461 aa15.98■□□□□ 0.15
USP28-212ENST00000544750 FRMPD3Q5JV73 1810 aa15.98■□□□□ 0.15
USP28-212ENST00000544750 HMGCRP04035 888 aa15.97■□□□□ 0.15
USP28-212ENST00000544750 RASGRF1Q13972 1273 aa15.97■□□□□ 0.15
USP28-212ENST00000544750 ZSCAN29Q8IWY8 852 aaPredicted RBP15.97■□□□□ 0.15
USP28-212ENST00000544750 PNMA3Q9UL41 463 aa15.97■□□□□ 0.15
USP28-212ENST00000544750 COL2A1P02458 1487 aaPredicted RBP15.97■□□□□ 0.15
USP28-212ENST00000544750 MROH7-TTC4A0A0A0MT08 1334 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 RPTORQ8N122 1335 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 FOCADQ5VW36 1801 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 GPR75-ASB3A0A0A6YYF3 556 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 IL15P40933 162 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms