RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 ARHGAP45Q92619 1136 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 KSR1Q8IVT5 923 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 CABS1Q96KC9 395 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 TTF2Q9UNY4 1162 aaKnown RBP17.24■□□□□ 0.35
CHD4-210ENST00000544040 UBL4BQ8N7F7 174 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 NOX5Q96PH1 765 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 TBC1D7Q9P0N9 293 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 FAM135AQ9P2D6 1515 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 PARP1P09874 1014 aaKnown RBP17.24■□□□□ 0.35
CHD4-210ENST00000544040 HMGB2P26583 209 aaKnown RBP17.24■□□□□ 0.35
CHD4-210ENST00000544040 LRRC43Q8N309 656 aa17.24■□□□□ 0.35
CHD4-210ENST00000544040 POLR2DO15514 142 aaKnown RBP17.23■□□□□ 0.35
CHD4-210ENST00000544040 GNAT2P19087 354 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 BAIAP2L1Q9UHR4 511 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 TIAM1Q13009 1591 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 GABPAQ06546 454 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 TRIM6Q9C030 488 aaPredicted RBP17.23■□□□□ 0.35
CHD4-210ENST00000544040 CEP85Q6P2H3 762 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 KSR2Q6VAB6 950 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 TAOK1Q7L7X3 1001 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 OGFOD1Q8N543 542 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 GSDMBQ8TAX9 411 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 TBC1D31Q96DN5 1066 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 FAM173BQ6P4H8 233 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 CSGALNACT2Q8N6G5 542 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 ANKRD42Q8N9B4 389 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 CBX8Q9HC52 389 aa17.23■□□□□ 0.35
CHD4-210ENST00000544040 CHMLP26374 656 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 DIXDC1Q155Q3 683 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 EIF6P56537 245 aaKnown RBP17.22■□□□□ 0.35
CHD4-210ENST00000544040 TRIM68Q6AZZ1 485 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 USP26Q9BXU7 913 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 TAB2Q9NYJ8 693 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 CASC4Q6P4E1 433 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 AFG3L2Q9Y4W6 797 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 MAN1A1P33908 653 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 SH2D4BQ5SQS7 431 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 NLRP3Q96P20 1036 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 RBM28Q9NW13 759 aaKnown RBP17.22■□□□□ 0.35
CHD4-210ENST00000544040 KCNH3Q9ULD8 1083 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 B4E1Z4 1266 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 ZNF75DP51815 510 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 SND1Q7KZF4 910 aaKnown RBP eCLIP17.22■□□□□ 0.35
CHD4-210ENST00000544040 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.22■□□□□ 0.35
CHD4-210ENST00000544040 NCOA5Q9HCD5 579 aaKnown RBP17.22■□□□□ 0.35
CHD4-210ENST00000544040 ACEP12821 1306 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 TTC41PQ6P2S7 1318 aa17.22■□□□□ 0.35
CHD4-210ENST00000544040 CDK13Q14004 1512 aaKnown RBP17.21■□□□□ 0.35
CHD4-210ENST00000544040 CETN3O15182 167 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 KRT15P19012 456 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 VWA3BQ502W6 1294 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 FBXO31Q5XUX0 539 aaPredicted RBP17.21■□□□□ 0.35
CHD4-210ENST00000544040 RNF10Q8N5U6 811 aaKnown RBP17.21■□□□□ 0.35
CHD4-210ENST00000544040 CTTNBP2NLQ9P2B4 639 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 CLEC11AQ9Y240 323 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 EPRSP07814 1512 aaKnown RBP17.21■□□□□ 0.35
CHD4-210ENST00000544040 LIN9Q5TKA1 542 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 PLEKHM2Q8IWE5 1019 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 GRIN2BQ13224 1484 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 TRIM14Q14142 442 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 RILPQ96NA2 401 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 I3L4J1 428 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 TXKP42681 527 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 CCDC38Q502W7 563 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 OTUD7BQ6GQQ9 843 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 CNNM4Q6P4Q7 775 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 FCHSD1Q86WN1 690 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 RABGAP1Q9Y3P9 1069 aa17.21■□□□□ 0.35
CHD4-210ENST00000544040 CALUO43852 315 aaPredicted RBP17.21■□□□□ 0.34
CHD4-210ENST00000544040 TBC1D8O95759 1140 aa17.21■□□□□ 0.34
CHD4-210ENST00000544040 MTX1Q13505 466 aa17.21■□□□□ 0.34
CHD4-210ENST00000544040 CCDC117Q8IWD4 279 aaPredicted RBP17.21■□□□□ 0.34
CHD4-210ENST00000544040 MYO1AQ9UBC5 1043 aa17.21■□□□□ 0.34
CHD4-210ENST00000544040 DDX39AO00148 427 aaKnown RBP17.2■□□□□ 0.34
CHD4-210ENST00000544040 MBD4O95243 580 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 PAK1Q13153 545 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 SLF1Q9BQI6 1058 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 ABCC5O15440 1437 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 ANO1Q5XXA6 986 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 GUCY2FP51841 1108 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 MAP7Q14244 749 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 KRT24Q2M2I5 525 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 CCDC105Q8IYK2 499 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 VCXQ9H320 206 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 BICC1Q9H694 974 aaKnown RBP17.2■□□□□ 0.34
CHD4-210ENST00000544040 TTLL3Q9Y4R7 772 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 ALDH1L1O75891 902 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 RPS6KB1P23443 525 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 PLCD1P51178 756 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 RAD51AP2Q09MP3 1159 aa17.2■□□□□ 0.34
CHD4-210ENST00000544040 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.2■□□□□ 0.342e-7■■■■□ 19.3
CHD4-210ENST00000544040 INTS4Q96HW7 963 aaKnown RBP17.19■□□□□ 0.34
CHD4-210ENST00000544040 GIPC1O14908 333 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 RLBP1P12271 317 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 ARHGAP25P42331 645 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 DYMQ7RTS9 669 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 TRPC3Q13507 836 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 VPS37BQ9H9H4 285 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 CEP128Q6ZU80 1094 aa17.19■□□□□ 0.34
CHD4-210ENST00000544040 RUFY4Q6ZNE9 571 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms