RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 USP5P45974 858 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 DYNLL1P63167 89 aaKnown RBP14.61□□□□□ -0.07
DDX55-210ENST00000543016 NMIQ13287 307 aaPredicted RBP14.61□□□□□ -0.07
DDX55-210ENST00000543016 USP48Q86UV5 1035 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 SKAP1Q86WV1 359 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 LCORLQ8N3X6 602 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 NACAP1Q9BZK3 213 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 ARMT1Q9H993 441 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 COL2A1P02458 1487 aaPredicted RBP14.61□□□□□ -0.07
DDX55-210ENST00000543016 ECM29Q5VYK3 1845 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 PATL2C9JE40 543 aaKnown RBP14.6□□□□□ -0.07
DDX55-210ENST00000543016 CDC45O75419 566 aa14.6□□□□□ -0.07
DDX55-210ENST00000543016 NFIAQ12857 509 aa14.6□□□□□ -0.07
DDX55-210ENST00000543016 TGFBRAP1Q8WUH2 860 aa14.6□□□□□ -0.07
DDX55-210ENST00000543016 OSBPL5Q9H0X9 879 aaPredicted RBP14.6□□□□□ -0.07
DDX55-210ENST00000543016 FAM198AQ9UFP1 575 aa14.6□□□□□ -0.07
DDX55-210ENST00000543016 SLC4A4Q9Y6R1 1079 aa14.6□□□□□ -0.07
DDX55-210ENST00000543016 ATRNL1Q5VV63 1379 aa14.6□□□□□ -0.07
DDX55-210ENST00000543016 A0A0D9SFI3 127 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 M0R2C6 588 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 CHGBP05060 677 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 CACNB3P54284 484 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 SLFNL1Q499Z3 407 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 CWC27Q6UX04 472 aaKnown RBP14.59□□□□□ -0.07
DDX55-210ENST00000543016 TTC6Q86TZ1 520 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 AMOTL1Q8IY63 956 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 FAM227BQ96M60 508 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 GLIS2Q9BZE0 524 aaPredicted RBP14.59□□□□□ -0.07
DDX55-210ENST00000543016 FLT1P17948 1338 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 CCDC171Q6TFL3 1326 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 CNTNAP1P78357 1384 aa14.59□□□□□ -0.07
DDX55-210ENST00000543016 ADM5C9JUS6 153 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 HLA-DOAP06340 250 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 FKBP1BP68106 108 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 PICALMQ13492 652 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 ALX1Q15699 326 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 DCAF15Q66K64 600 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 FOXP4Q8IVH2 680 aaPredicted RBP14.58□□□□□ -0.08
DDX55-210ENST00000543016 MAPKAPK5Q8IW41 473 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 CDCA5Q96FF9 252 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 TEPSINQ96N21 525 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 SEC62Q99442 399 aaKnown RBP14.58□□□□□ -0.08
DDX55-210ENST00000543016 DCP1AQ9NPI6 582 aaPredicted RBP14.58□□□□□ -0.08
DDX55-210ENST00000543016 DDX4Q9NQI0 724 aaKnown RBP14.58□□□□□ -0.08
DDX55-210ENST00000543016 PI4KBQ9UBF8 816 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 MKRN1Q9UHC7 482 aaKnown RBP14.58□□□□□ -0.08
DDX55-210ENST00000543016 PASKQ96RG2 1323 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 AK9Q5TCS8 1911 aa14.58□□□□□ -0.08
DDX55-210ENST00000543016 UNCXA6NJT0 531 aa14.57□□□□□ -0.08
DDX55-210ENST00000543016 TBC1D12O60347 775 aa14.57□□□□□ -0.08
DDX55-210ENST00000543016 TCP10Q12799 353 aa14.57□□□□□ -0.08
DDX55-210ENST00000543016 ZSCAN29Q8IWY8 852 aaPredicted RBP14.57□□□□□ -0.08
DDX55-210ENST00000543016 TMEM39BQ9GZU3 492 aa14.57□□□□□ -0.08
DDX55-210ENST00000543016 ARPP21Q9UBL0 812 aaPredicted RBP14.57□□□□□ -0.08
DDX55-210ENST00000543016 GSG1L2A8MUP6 293 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 SGSM2O43147 1006 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 PPP1R12BO60237 982 aaPredicted RBP14.56□□□□□ -0.08
DDX55-210ENST00000543016 APPP05067 770 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 MAP3K10Q02779 954 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 SBK1Q52WX2 424 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 KIAA1211Q6ZU35 1233 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 SDR42E1Q8WUS8 393 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 CSRNP1Q96S65 589 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 DSCC1Q9BVC3 393 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 EHD4Q9H223 541 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 MCM9Q9NXL9 1143 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 HERC5Q9UII4 1024 aaKnown RBP14.56□□□□□ -0.08
DDX55-210ENST00000543016 ZMYM6O95789 1325 aa14.56□□□□□ -0.08
DDX55-210ENST00000543016 POLR2AP24928 1970 aaKnown RBP14.56□□□□□ -0.08
DDX55-210ENST00000543016 PRKAB2O43741 272 aa14.55□□□□□ -0.08
DDX55-210ENST00000543016 POLR3DP05423 398 aaPredicted RBP14.55□□□□□ -0.08
DDX55-210ENST00000543016 HSPD1P10809 573 aaKnown RBP14.55□□□□□ -0.08
DDX55-210ENST00000543016 NBPF12Q5TAG4 269 aaPredicted RBP14.55□□□□□ -0.08
DDX55-210ENST00000543016 METTL16Q86W50 562 aaKnown RBP14.55□□□□□ -0.08
DDX55-210ENST00000543016 ZFPM1Q8IX07 1006 aa14.55□□□□□ -0.08
DDX55-210ENST00000543016 IFNL3Q8IZI9 196 aa14.55□□□□□ -0.08
DDX55-210ENST00000543016 ESYT1Q9BSJ8 1104 aa14.55□□□□□ -0.08
DDX55-210ENST00000543016 NAPBQ9H115 298 aa14.55□□□□□ -0.08
DDX55-210ENST00000543016 CTNNA3Q9UI47 895 aa14.55□□□□□ -0.08
DDX55-210ENST00000543016 DDTLA6NHG4 134 aaPredicted RBP14.54□□□□□ -0.08
DDX55-210ENST00000543016 TRAF5O00463 557 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 EPB41L2O43491 1005 aaKnown RBP14.54□□□□□ -0.08
DDX55-210ENST00000543016 CELF2O95319 508 aaKnown RBP14.54□□□□□ -0.08
DDX55-210ENST00000543016 TDO2P48775 406 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 MAP3K11Q16584 847 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 CCDC129Q6ZRS4 1044 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 SH3BP5LQ7L8J4 393 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 ARMC9Q7Z3E5 817 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 ZNF589Q86UQ0 364 aaPredicted RBP14.54□□□□□ -0.08
DDX55-210ENST00000543016 C2orf69Q8N8R5 385 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 ZNF287Q9HBT7 754 aa14.54□□□□□ -0.08
DDX55-210ENST00000543016 USP17L12C9JPN9 530 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 USP17L21D6R901 530 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 SLC3A2P08195 630 aaKnown RBP14.53□□□□□ -0.08
DDX55-210ENST00000543016 IREB2P48200 963 aaKnown RBP14.53□□□□□ -0.08
DDX55-210ENST00000543016 NT5C2P49902 561 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 C12orf60Q5U649 245 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 TRIM34Q9BYJ4 488 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 ZNF341Q9BYN7 854 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 GBA2Q9HCG7 927 aaPredicted RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms