RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 ANKRD44Q8N8A2 993 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 DDRGK1Q96HY6 314 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 CACNA1GO43497 2377 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 GPR37L1O60883 481 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 CYP2C8P10632 490 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 NHLH1Q02575 133 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 NUCB1Q02818 461 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 NEXNQ0ZGT2 675 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 AIMP1Q12904 312 aaKnown RBP10.27□□□□□ -0.77
CHD4-208ENST00000540960 IRF5Q13568 498 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 HSP90AB4PQ58FF6 505 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 SLC4A10Q6U841 1118 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 MTMR14Q8NCE2 650 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 ZKSCAN4Q969J2 545 aaPredicted RBP10.27□□□□□ -0.77
CHD4-208ENST00000540960 SRCIN1Q9C0H9 1055 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 OGDHLQ9ULD0 1010 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 XDHP47989 1333 aa10.27□□□□□ -0.77
CHD4-208ENST00000540960 XIRP2A4UGR9 3374 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 SPDYE2BA6NHP3 402 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 F8W031 263 aaPredicted RBP10.26□□□□□ -0.77
CHD4-208ENST00000540960 SPDYE6P0CI01 402 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 EIF2S2P20042 333 aaKnown RBP10.26□□□□□ -0.77
CHD4-208ENST00000540960 ATP2B4P23634 1241 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 KLRK1P26718 216 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 RGS3P49796 1198 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 GTF2IP78347 998 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 TFF2Q03403 129 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 MOGSQ13724 837 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 KRT24Q2M2I5 525 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 CFAP100Q494V2 611 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 COPS6Q7L5N1 327 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 ANKRD23Q86SG2 305 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 CHD1LQ86WJ1 897 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 ERO1BQ86YB8 467 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 IL27Q8NEV9 243 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 DNAAF4Q8WXU2 420 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 TNNQ9UQP3 1299 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 CSADQ9Y600 493 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 MAST2Q6P0Q8 1798 aa10.26□□□□□ -0.77
CHD4-208ENST00000540960 AK9Q5TCS8 1911 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 WDFY4Q6ZS81 3184 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 SMIM22K7EJ46 135 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 UBTFL1P0CB47 393 aaPredicted RBP10.25□□□□□ -0.77
CHD4-208ENST00000540960 MMP14P50281 582 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 KCNQ1P51787 676 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 KSR2Q6VAB6 950 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 CCDC85AQ96PX6 553 aaPredicted RBP10.25□□□□□ -0.77
CHD4-208ENST00000540960 TMEM39BQ9GZU3 492 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 DCTPP1Q9H773 170 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 MED23Q9ULK4 1368 aa10.25□□□□□ -0.77
CHD4-208ENST00000540960 ZDBF2Q9HCK1 2354 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 SPEF2Q9C093 1822 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 ATP5J2-PTCD1G3V325 749 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 TNPO2O14787 897 aaKnown RBP10.24□□□□□ -0.77
CHD4-208ENST00000540960 PPIL2Q13356 520 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 HSP90AB3PQ58FF7 597 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 XAGE3Q8WTP9 111 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 PHOX2BQ99453 314 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 COA1Q9GZY4 146 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 ZNF576Q9H609 170 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 HMX1Q9NP08 348 aaPredicted RBP10.24□□□□□ -0.77
CHD4-208ENST00000540960 CHPF2Q9P2E5 772 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 DAXXQ9UER7 740 aaPredicted RBP10.24□□□□□ -0.77
CHD4-208ENST00000540960 ARAP2Q8WZ64 1704 aa10.24□□□□□ -0.77
CHD4-208ENST00000540960 IRS4O14654 1257 aaPredicted RBP10.23□□□□□ -0.77
CHD4-208ENST00000540960 MYO1BO43795 1136 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 RAB11FIP3O75154 756 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 ADGRE1Q14246 886 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 ANKRD45Q5TZF3 282 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 CEP85Q6P2H3 762 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 CASC1Q6TDU7 716 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 LINS1Q8NG48 757 aa10.23□□□□□ -0.77
CHD4-208ENST00000540960 CFAP54Q96N23 3096 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 ATP8B2P98198 1209 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 BMP2KLQ5H9B9 411 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 AKNAD1Q5T1N1 836 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 GPAT2Q6NUI2 795 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 BADQ92934 168 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 PRDM12Q9H4Q4 367 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 ZNF70Q9UC06 446 aaPredicted RBP10.22□□□□□ -0.77
CHD4-208ENST00000540960 SPTBN4Q9H254 2564 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 CACNA1FO60840 1977 aa10.22□□□□□ -0.77
CHD4-208ENST00000540960 PI4KAP2A4QPH2 592 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 TCP10L2B9ZVM9 353 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 HMGCRP04035 888 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 DNAJB2P25686 324 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 ATN1P54259 1190 aaPredicted RBP10.21□□□□□ -0.77
CHD4-208ENST00000540960 G2E3Q7L622 706 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 RIC3Q7Z5B4 369 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 ERC1Q8IUD2 1116 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 PI4KAP1Q8N8J0 262 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 FBXL18Q96ME1 805 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 WRNIP1Q96S55 665 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 ISCA1Q9BUE6 129 aa10.21□□□□□ -0.77
CHD4-208ENST00000540960 TDRD3Q9H7E2 651 aaKnown RBP10.21□□□□□ -0.77
CHD4-208ENST00000540960 C9orf78Q9NZ63 289 aaPredicted RBP10.21□□□□□ -0.77
CHD4-208ENST00000540960 USP34Q70CQ2 3546 aa10.21□□□□□ -0.78
CHD4-208ENST00000540960 PLXNB2O15031 1838 aa10.21□□□□□ -0.78
CHD4-208ENST00000540960 KRT37O76014 449 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 RBM5P52756 815 aaKnown RBP eCLIP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms