RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 PDS5AQ29RF7 1337 aaKnown RBP9.14□□□□□ -0.95
YBX3-209ENST00000540747 A0A1W2PPC1 479 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 SEMA3EO15041 775 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 FARP2O94887 1054 aaPredicted RBP9.14□□□□□ -0.95
YBX3-209ENST00000540747 SGPL1O95470 568 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 PHKA1P46020 1223 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 RGS3P49796 1198 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 FCGRTP55899 365 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 PXYLP1Q8TE99 480 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 FAM163AQ96GL9 167 aaPredicted RBP9.14□□□□□ -0.95
YBX3-209ENST00000540747 HTATIP2Q9BUP3 242 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 CRISPLD2Q9H0B8 497 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 RNF208Q9H0X6 261 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 DDX4Q9NQI0 724 aaKnown RBP9.14□□□□□ -0.95
YBX3-209ENST00000540747 PAK6Q9NQU5 681 aaPredicted RBP9.14□□□□□ -0.95
YBX3-209ENST00000540747 USP40Q9NVE5 1235 aa9.14□□□□□ -0.95
YBX3-209ENST00000540747 DDTLA6NHG4 134 aaPredicted RBP9.13□□□□□ -0.95
YBX3-209ENST00000540747 ADCY3O60266 1144 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 ECM2O94769 699 aaPredicted RBP9.13□□□□□ -0.95
YBX3-209ENST00000540747 LDHBP07195 334 aaKnown RBP9.13□□□□□ -0.95
YBX3-209ENST00000540747 SLURP2P0DP57 97 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 CAPN2P17655 700 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 FLT3LGP49771 235 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 UBXN2AP68543 259 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 ATP2B3Q16720 1220 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 FASTKD5Q7L8L6 764 aaKnown RBP9.13□□□□□ -0.95
YBX3-209ENST00000540747 ZNF384Q8TF68 577 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 DPF3Q92784 378 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 ZHX2Q9Y6X8 837 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 DOCK1Q14185 1865 aa9.13□□□□□ -0.95
YBX3-209ENST00000540747 ALPK3Q96L96 1907 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 SOX1O00570 391 aaPredicted RBP9.12□□□□□ -0.95
YBX3-209ENST00000540747 CTNND1O60716 968 aaKnown RBP9.12□□□□□ -0.95
YBX3-209ENST00000540747 NPM3O75607 178 aaKnown RBP9.12□□□□□ -0.95
YBX3-209ENST00000540747 INHAP05111 366 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 ELNP15502 786 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 ADORA1P30542 326 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 RHBDL3P58872 404 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 RASGRF1Q13972 1273 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 DENND2AQ9ULE3 1009 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 NR2E3Q9Y5X4 410 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 COL2A1P02458 1487 aaPredicted RBP9.12□□□□□ -0.95
YBX3-209ENST00000540747 DOCK3Q8IZD9 2030 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 LOC285556D6RIA3 1793 aa9.12□□□□□ -0.95
YBX3-209ENST00000540747 LAMA2P24043 3122 aaKnown RBP9.11□□□□□ -0.95
YBX3-209ENST00000540747 ANP32CO43423 234 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 TBC1D12O60347 775 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 IL15P40933 162 aaPredicted RBP9.11□□□□□ -0.95
YBX3-209ENST00000540747 MNX1P50219 401 aaPredicted RBP9.11□□□□□ -0.95
YBX3-209ENST00000540747 FAM110CQ1W6H9 321 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 ALDH1L2Q3SY69 923 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 CCDC102BQ68D86 513 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 COPRSQ9NQ92 184 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 PICK1Q9NRD5 415 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 GNL3LQ9NVN8 582 aaKnown RBP9.11□□□□□ -0.95
YBX3-209ENST00000540747 CEP126Q9P2H0 1117 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.11□□□□□ -0.95
YBX3-209ENST00000540747 AGTPBP1Q9UPW5 1226 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 MYH2Q9UKX2 1941 aa9.11□□□□□ -0.95
YBX3-209ENST00000540747 MROH7-TTC4A0A0A0MT08 1334 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 GPR75-ASB3A0A0A6YYF3 556 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 E9PSI1 815 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 TNPO2O14787 897 aaKnown RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 SLFN5Q08AF3 891 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 TREML2Q5T2D2 321 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 GADL1Q6ZQY3 521 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 CCDC84Q86UT8 332 aaPredicted RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 TRMT2AQ8IZ69 625 aaKnown RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 ZGPATQ8N5A5 531 aaKnown RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 PROCA1Q8NCQ7 364 aaPredicted RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 DIS3LQ8TF46 1054 aaKnown RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 DEFB118Q96PH6 123 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 GDF15Q99988 308 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 SIL1Q9H173 461 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 BIN2Q9UBW5 565 aaPredicted RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 GJD2Q9UKL4 321 aa9.1□□□□□ -0.95
YBX3-209ENST00000540747 PA2G4Q9UQ80 394 aaKnown RBP9.1□□□□□ -0.95
YBX3-209ENST00000540747 AK9Q5TCS8 1911 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 UNC80Q8N2C7 3258 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 TRIM75PA6NK02 468 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 UBTFL1P0CB47 393 aaPredicted RBP9.09□□□□□ -0.95
YBX3-209ENST00000540747 BMP8BP34820 402 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 BTDP43251 543 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 RRP1BQ14684 758 aaKnown RBP9.09□□□□□ -0.95
YBX3-209ENST00000540747 FAM9BQ8IZU0 186 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 ANKRD13CQ8N6S4 541 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 ANKLE1Q8NAG6 615 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 LRCH3Q96II8 777 aa9.09□□□□□ -0.95
YBX3-209ENST00000540747 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.09□□□□□ -0.95
YBX3-209ENST00000540747 LRRFIP2Q9Y608 721 aaKnown RBP9.09□□□□□ -0.95
YBX3-209ENST00000540747 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.09□□□□□ -0.95
YBX3-209ENST00000540747 PLXNB2O15031 1838 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 DNAH12Q6ZR08 3092 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 EVI5O60447 810 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 MAP4K4O95819 1239 aaPredicted RBP9.08□□□□□ -0.96
YBX3-209ENST00000540747 MECOMQ03112 1051 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 MTX1Q13505 466 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 SH3D19Q5HYK7 790 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 MAP3K21Q5TCX8 1036 aa9.08□□□□□ -0.96
YBX3-209ENST00000540747 GPR153Q6NV75 609 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms