RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 F8W031 263 aaPredicted RBP12.82□□□□□ -0.36
TRIM3-211ENST00000532542 DHX8Q14562 1220 aaKnown RBP12.82□□□□□ -0.36
TRIM3-211ENST00000532542 CNNM3Q8NE01 707 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 MYL10Q9BUA6 226 aa12.82□□□□□ -0.36
TRIM3-211ENST00000532542 SMC2O95347 1197 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 SYKP43405 635 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 PPP4R3BQ5MIZ7 849 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 APOA5Q6Q788 366 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 DPP8Q6V1X1 898 aaPredicted RBP12.81□□□□□ -0.36
TRIM3-211ENST00000532542 FNBP4Q8N3X1 1017 aaPredicted RBP12.81□□□□□ -0.36
TRIM3-211ENST00000532542 STK32BQ9NY57 414 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 ELP1O95163 1332 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 CHGBP05060 677 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 ADD1P35611 737 aaKnown RBP12.81□□□□□ -0.36
TRIM3-211ENST00000532542 OTUD7BQ6GQQ9 843 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 PHKBQ93100 1093 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 RBSNQ9H1K0 784 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 TPM2P07951 284 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 TYRO3Q06418 890 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 KRT40Q6A162 431 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 TTC6Q86TZ1 520 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 ZNF654Q8IZM8 581 aa12.81□□□□□ -0.36
TRIM3-211ENST00000532542 CALML3P27482 149 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 FAM160A1Q05DH4 1040 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 TMEM87AQ8NBN3 555 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 CCDC148Q8NFR7 591 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 FBXO18Q8NFZ0 1043 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 PRKAB2O43741 272 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 ANO1Q5XXA6 986 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 MPNDQ8N594 471 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 SH2B2O14492 632 aaPredicted RBP12.8□□□□□ -0.36
TRIM3-211ENST00000532542 MARCKSP29966 332 aaPredicted RBP12.8□□□□□ -0.36
TRIM3-211ENST00000532542 LIFRP42702 1097 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 RILPL1Q5EBL4 403 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 STOX1Q6ZVD7 989 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 IL17RAQ96F46 866 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 YEATS4O95619 227 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 ADCY5O95622 1261 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 NFIXQ14938 502 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 MFSD14BQ5SR56 506 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 CTDP1Q9Y5B0 961 aaPredicted RBP12.8□□□□□ -0.36
TRIM3-211ENST00000532542 TNKSO95271 1327 aa12.8□□□□□ -0.36
TRIM3-211ENST00000532542 SCN11AQ9UI33 1791 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 TRIM75PA6NK02 468 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 EXOSC10Q01780 885 aaKnown RBP12.79□□□□□ -0.36
TRIM3-211ENST00000532542 PICALMQ13492 652 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 KANK3Q6NY19 840 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 ZSCAN10Q96SZ4 725 aaPredicted RBP12.79□□□□□ -0.36
TRIM3-211ENST00000532542 H0YIN7 160 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 PES1O00541 588 aaKnown RBP12.79□□□□□ -0.36
TRIM3-211ENST00000532542 KRT2P35908 639 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 ANO6Q4KMQ2 910 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 MB21D2Q8IYB1 491 aaPredicted RBP12.79□□□□□ -0.36
TRIM3-211ENST00000532542 PPP1R1BQ9UD71 204 aaPredicted RBP12.79□□□□□ -0.36
TRIM3-211ENST00000532542 FANCBQ8NB91 859 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 CDK5RAP3Q96JB5 506 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 CLSTN2Q9H4D0 955 aa12.79□□□□□ -0.36
TRIM3-211ENST00000532542 SERPINC1P01008 464 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 SLC10A5Q5PT55 438 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 MYSM1Q5VVJ2 828 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 PNPLA7Q6ZV29 1317 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 FAM84BQ96KN1 310 aaPredicted RBP12.78□□□□□ -0.36
TRIM3-211ENST00000532542 PYM1Q9BRP8 204 aaKnown RBP12.78□□□□□ -0.36
TRIM3-211ENST00000532542 ZSWIM5Q9P217 1185 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 CBFA2T2O43439 604 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 DIS3L2Q8IYB7 885 aaKnown RBP12.78□□□□□ -0.36
TRIM3-211ENST00000532542 DYNLL1P63167 89 aaKnown RBP12.78□□□□□ -0.36
TRIM3-211ENST00000532542 CCDC96Q2M329 555 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 GAS2L3Q86XJ1 694 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 TGFBRAP1Q8WUH2 860 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 BRIP1Q9BX63 1249 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 FGFR2P21802 821 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 RXRBP28702 533 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 RBM6P78332 1123 aaKnown RBP12.78□□□□□ -0.36
TRIM3-211ENST00000532542 MECOMQ03112 1051 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 TBC1D10CQ8IV04 446 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 STAG1Q8WVM7 1258 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 MTA3Q9BTC8 594 aa12.78□□□□□ -0.36
TRIM3-211ENST00000532542 SAP30BPQ9UHR5 308 aaKnown RBP12.78□□□□□ -0.36
TRIM3-211ENST00000532542 DISP2A7MBM2 1401 aa12.77□□□□□ -0.36
TRIM3-211ENST00000532542 ROBO1Q9Y6N7 1651 aa12.77□□□□□ -0.36
TRIM3-211ENST00000532542 SMIM5Q71RC9 77 aa12.77□□□□□ -0.36
TRIM3-211ENST00000532542 USP28Q96RU2 1077 aa12.77□□□□□ -0.36
TRIM3-211ENST00000532542 V9GY48 417 aaPredicted RBP12.77□□□□□ -0.36
TRIM3-211ENST00000532542 TSR1Q2NL82 804 aaKnown RBP12.77□□□□□ -0.37
TRIM3-211ENST00000532542 HS1BP3Q53T59 392 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 TAF6LQ9Y6J9 622 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 PPEF1O14829 653 aaPredicted RBP12.77□□□□□ -0.37
TRIM3-211ENST00000532542 IGSF3O75054 1194 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 NT5C2P49902 561 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 GTF2IP78347 998 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 TFAP4Q01664 338 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 MAPKAPK5Q8IW41 473 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 KRI1Q8N9T8 703 aaKnown RBP12.77□□□□□ -0.37
TRIM3-211ENST00000532542 KCPQ6ZWJ8 1503 aa12.77□□□□□ -0.37
TRIM3-211ENST00000532542 FILIP1LQ4L180 1135 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 GPHNQ9NQX3 736 aaPredicted RBP12.76□□□□□ -0.37
TRIM3-211ENST00000532542 GSG1L2A8MUP6 293 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 RESTQ13127 1097 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 SMARCC2Q8TAQ2 1214 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms