RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FANCD2OSQ96PS1 177 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 TRAIPQ9BWF2 469 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 EMILIN2Q9BXX0 1053 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 PIDD1Q9HB75 910 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 ANGEL1Q9UNK9 670 aaKnown RBP6.98□□□□□ -1.29
CD44-235ENST00000532339 GIPC1O14908 333 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 NME2P22392 152 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 ARNTP27540 789 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 GSTT1P30711 240 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 ATP2B2Q01814 1243 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 PDZD3Q86UT5 571 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 C1GALT1Q9NS00 363 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 ADGRL1O94910 1474 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 IFT140Q96RY7 1462 aa6.97□□□□□ -1.29
CD44-235ENST00000532339 COL17A1Q9UMD9 1497 aaPredicted RBP6.97□□□□□ -1.29
CD44-235ENST00000532339 URB2Q14146 1524 aaKnown RBP6.96□□□□□ -1.29
CD44-235ENST00000532339 CHD1O14646 1710 aa6.96□□□□□ -1.29
CD44-235ENST00000532339 ZNF765Q7L2R6 523 aa6.96□□□□□ -1.3
CD44-235ENST00000532339 CEP44Q9C0F1 390 aa6.96□□□□□ -1.3
CD44-235ENST00000532339 PPM1HQ9ULR3 514 aa6.96□□□□□ -1.3
CD44-235ENST00000532339 PCDHGC5Q9Y5F6 944 aa6.96□□□□□ -1.3
CD44-235ENST00000532339 DYNC1LI2O43237 492 aaPredicted RBP6.95□□□□□ -1.3
CD44-235ENST00000532339 PRNPP04156 253 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 OGFOD3Q6PK18 319 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 VSIG10LQ86VR7 867 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 SMYD4Q8IYR2 804 aaPredicted RBP6.95□□□□□ -1.3
CD44-235ENST00000532339 C3orf58Q8NDZ4 430 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 STK35Q8TDR2 534 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 NECAB3Q96P71 396 aaPredicted RBP6.95□□□□□ -1.3
CD44-235ENST00000532339 LGR6Q9HBX8 967 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 LRRC4CQ9HCJ2 640 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 DISC1Q9NRI5 854 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 BSDC1Q9NW68 430 aaPredicted RBP6.95□□□□□ -1.3
CD44-235ENST00000532339 CCDC39Q9UFE4 941 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 SPG7Q9UQ90 795 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 SAMM50Q9Y512 469 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 SPATA31D1Q6ZQQ2 1576 aa6.95□□□□□ -1.3
CD44-235ENST00000532339 GAPVD1Q14C86 1478 aa6.94□□□□□ -1.3
CD44-235ENST00000532339 CYP27C1Q4G0S4 372 aa6.94□□□□□ -1.3
CD44-235ENST00000532339 MAP1SQ66K74 1059 aaPredicted RBP6.94□□□□□ -1.3
CD44-235ENST00000532339 TPTE2Q6XPS3 522 aa6.94□□□□□ -1.3
CD44-235ENST00000532339 FBXL18Q96ME1 805 aa6.94□□□□□ -1.3
CD44-235ENST00000532339 CLASP1Q7Z460 1538 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 RNGTTO60942 597 aaKnown RBP6.93□□□□□ -1.3
CD44-235ENST00000532339 ZNF252P-AS1Q0IIN9 211 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 TTLL4Q14679 1199 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 SETDB2Q96T68 719 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 OSBPL7Q9BZF2 842 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 CBX8Q9HC52 389 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 PEG3Q9GZU2 1588 aa6.93□□□□□ -1.3
CD44-235ENST00000532339 KDM6BO15054 1643 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 PAX4O43316 350 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 HCLS1P14317 486 aaPredicted RBP6.92□□□□□ -1.3
CD44-235ENST00000532339 ZC3H12AQ5D1E8 599 aaKnown RBP6.92□□□□□ -1.3
CD44-235ENST00000532339 GPBAR1Q8TDU6 330 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 ANKRD24Q8TF21 1146 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 ACSBG1Q96GR2 724 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 ZC3H7BQ9UGR2 993 aaKnown RBP6.92□□□□□ -1.3
CD44-235ENST00000532339 PCOLCE2Q9UKZ9 415 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 WWC3Q9ULE0 1092 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 KIF13AQ9H1H9 1805 aa6.92□□□□□ -1.3
CD44-235ENST00000532339 EIF4G3O43432 1585 aaKnown RBP6.91□□□□□ -1.3
CD44-235ENST00000532339 ENC1O14682 589 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 P4HBP07237 508 aaKnown RBP6.91□□□□□ -1.3
CD44-235ENST00000532339 FAM87AP0C7U9 286 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 TAL1P17542 331 aaPredicted RBP6.91□□□□□ -1.3
CD44-235ENST00000532339 ERVK-24P63145 666 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 CDK5R2Q13319 367 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 FRMD6Q96NE9 622 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 C12orf49Q9H741 205 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 SSU72Q9NP77 194 aaKnown RBP6.91□□□□□ -1.3
CD44-235ENST00000532339 CACNA2D2Q9NY47 1150 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 FAM8A1Q9UBU6 413 aa6.91□□□□□ -1.3
CD44-235ENST00000532339 TRIM37O94972 964 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 LRRC14Q15048 493 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 SCARA3Q6AZY7 606 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 LLGL2Q6P1M3 1020 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 TP53INP2Q8IXH6 220 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 ABI1Q8IZP0 508 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 RNF214Q8ND24 703 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 ADGRE2Q9UHX3 823 aa6.9□□□□□ -1.3
CD44-235ENST00000532339 FBXO24O75426 580 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 LDHBP07195 334 aaKnown RBP6.89□□□□□ -1.31
CD44-235ENST00000532339 NEFMP07197 916 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 USP17L7P0C7H9 530 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 BMP6P22004 513 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.89□□□□□ -1.31
CD44-235ENST00000532339 AGBL5Q8NDL9 886 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 FLCNQ8NFG4 579 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 KRTAP9-2Q9BYQ4 174 aa6.89□□□□□ -1.31
CD44-235ENST00000532339 PAGE1O75459 146 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 FGD1P98174 961 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 NFXL1Q6ZNB6 911 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 STK11IPQ8N1F8 1099 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 GRIN3AQ8TCU5 1115 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 ISL2Q96A47 359 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 CYP8B1Q9UNU6 501 aa6.88□□□□□ -1.31
CD44-235ENST00000532339 COL19A1Q14993 1142 aa6.87□□□□□ -1.31
CD44-235ENST00000532339 MPRIPQ6WCQ1 1025 aa6.87□□□□□ -1.31
CD44-235ENST00000532339 PICK1Q9NRD5 415 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms