RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 ATRNL1Q5VV63 1379 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 DNAH12Q6ZR08 3092 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 PHF20L1A8MW92 1017 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 FGFR2P21802 821 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 TREML2Q5T2D2 321 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 FKBP1CQ5VVH2 108 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 HHIPL2Q6UWX4 724 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 SLAIN1Q8ND83 568 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 USP40Q9NVE5 1235 aa11.29□□□□□ -0.6
USF1-210ENST00000531842 TRIM75PA6NK02 468 aa11.28□□□□□ -0.6
USF1-210ENST00000531842 TNPO2O14787 897 aaKnown RBP11.28□□□□□ -0.6
USF1-210ENST00000531842 ALDH1L1O75891 902 aa11.28□□□□□ -0.6
USF1-210ENST00000531842 RABL6Q3YEC7 729 aaPredicted RBP11.28□□□□□ -0.6
USF1-210ENST00000531842 NOL9Q5SY16 702 aaKnown RBP11.28□□□□□ -0.6
USF1-210ENST00000531842 DEFB123Q8N688 67 aa11.28□□□□□ -0.6
USF1-210ENST00000531842 ANKRD13CQ8N6S4 541 aa11.28□□□□□ -0.6
USF1-210ENST00000531842 PARK7Q99497 189 aaKnown RBP11.28□□□□□ -0.6
USF1-210ENST00000531842 DDX4Q9NQI0 724 aaKnown RBP11.28□□□□□ -0.6
USF1-210ENST00000531842 LOC285556D6RIA3 1793 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 A0A0G2JLL6 359 aaPredicted RBP11.27□□□□□ -0.61
USF1-210ENST00000531842 ZNF316A6NFI3 1004 aaPredicted RBP11.27□□□□□ -0.61
USF1-210ENST00000531842 DDTLA6NHG4 134 aaPredicted RBP11.27□□□□□ -0.61
USF1-210ENST00000531842 PTPRAP18433 802 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 RGS3P49796 1198 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 MNX1P50219 401 aaPredicted RBP11.27□□□□□ -0.61
USF1-210ENST00000531842 PRRT2Q7Z6L0 340 aaPredicted RBP11.27□□□□□ -0.61
USF1-210ENST00000531842 HOOK2Q96ED9 719 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 GDF15Q99988 308 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 SIL1Q9H173 461 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 PAK6Q9NQU5 681 aaPredicted RBP11.27□□□□□ -0.61
USF1-210ENST00000531842 AFG3L2Q9Y4W6 797 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 UTYO14607 1347 aa11.27□□□□□ -0.61
USF1-210ENST00000531842 FRMPD3Q5JV73 1810 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 CXCL11O14625 94 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 ADORA1P30542 326 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 RFX5P48382 616 aaPredicted RBP11.26□□□□□ -0.61
USF1-210ENST00000531842 PICALMQ13492 652 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 PUM3Q15397 648 aaKnown RBP11.26□□□□□ -0.61
USF1-210ENST00000531842 ATG9AQ7Z3C6 839 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 SCYL3Q8IZE3 742 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 MRIQ9BWK5 157 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 CRISPLD2Q9H0B8 497 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.26□□□□□ -0.61
USF1-210ENST00000531842 MAST3O60307 1309 aa11.26□□□□□ -0.61
USF1-210ENST00000531842 SIPA1L1O43166 1804 aa11.25□□□□□ -0.61
USF1-210ENST00000531842 SPTBN5Q9NRC6 3674 aaKnown RBP11.25□□□□□ -0.61
USF1-210ENST00000531842 IFIT1P09914 478 aaKnown RBP11.25□□□□□ -0.61
USF1-210ENST00000531842 MAGEA10P43363 369 aaPredicted RBP11.25□□□□□ -0.61
USF1-210ENST00000531842 PHKA1P46020 1223 aa11.25□□□□□ -0.61
USF1-210ENST00000531842 RRP1BQ14684 758 aaKnown RBP11.25□□□□□ -0.61
USF1-210ENST00000531842 SMCR8Q8TEV9 937 aaPredicted RBP11.25□□□□□ -0.61
USF1-210ENST00000531842 PRUNE2Q8WUY3 3088 aa11.25□□□□□ -0.61
USF1-210ENST00000531842 RFX7Q2KHR2 1363 aa11.25□□□□□ -0.61
USF1-210ENST00000531842 MYO5AQ9Y4I1 1855 aaKnown RBP11.25□□□□□ -0.61
USF1-210ENST00000531842 CDK5RAP2Q96SN8 1893 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 LDHBP07195 334 aaKnown RBP11.24□□□□□ -0.61
USF1-210ENST00000531842 SLC5A1P13866 664 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 SHROOM1Q2M3G4 852 aaPredicted RBP11.24□□□□□ -0.61
USF1-210ENST00000531842 WDR63Q8IWG1 891 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 ZSCAN29Q8IWY8 852 aaPredicted RBP11.24□□□□□ -0.61
USF1-210ENST00000531842 WDR66Q8TBY9 1149 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 USP44Q9H0E7 712 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 PICK1Q9NRD5 415 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 MTMR10Q9NXD2 777 aa11.24□□□□□ -0.61
USF1-210ENST00000531842 EYA2O00167 538 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 IRF5Q13568 498 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 FASTKD5Q7L8L6 764 aaKnown RBP11.23□□□□□ -0.61
USF1-210ENST00000531842 NECAB2Q7Z6G3 386 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 MRPL50Q8N5N7 158 aaKnown RBP11.23□□□□□ -0.61
USF1-210ENST00000531842 PXYLP1Q8TE99 480 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 LPIN2Q92539 896 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 FAM161BQ96MY7 647 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 COL25A1Q9BXS0 654 aaPredicted RBP11.23□□□□□ -0.61
USF1-210ENST00000531842 MRS2Q9HD23 443 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 PA2G4Q9UQ80 394 aaKnown RBP11.23□□□□□ -0.61
USF1-210ENST00000531842 SUGT1Q9Y2Z0 365 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 LRRFIP2Q9Y608 721 aaKnown RBP11.23□□□□□ -0.61
USF1-210ENST00000531842 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.23□□□□□ -0.61
USF1-210ENST00000531842 PFASO15067 1338 aa11.23□□□□□ -0.61
USF1-210ENST00000531842 CDH23Q9H251 3354 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 A0A1W2PPC1 479 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 HMGCS2P54868 508 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 ATP2B3Q16720 1220 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 ZNF384Q8TF68 577 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 TRIB2Q92519 343 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 GJD2Q9UKL4 321 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 AGTPBP1Q9UPW5 1226 aa11.22□□□□□ -0.61
USF1-210ENST00000531842 KIF16BQ96L93 1317 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 CYP2B6P20813 491 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 BTDP43251 543 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 JAG1P78504 1218 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 MDM2Q00987 491 aaPredicted RBP11.21□□□□□ -0.61
USF1-210ENST00000531842 SPP2Q13103 211 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 COA7Q96BR5 231 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 IDI2Q9BXS1 227 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 ABCF2Q9UG63 623 aa11.21□□□□□ -0.61
USF1-210ENST00000531842 GAKO14976 1311 aa11.2□□□□□ -0.62
USF1-210ENST00000531842 HMGCRP04035 888 aa11.2□□□□□ -0.62
USF1-210ENST00000531842 BMP8BP34820 402 aa11.2□□□□□ -0.62
USF1-210ENST00000531842 RASGRF1Q13972 1273 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms