RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 RING1Q06587 406 aa8□□□□□ -1.13
CD44-231ENST00000531110 FAM83CQ9BQN1 747 aa8□□□□□ -1.13
CD44-231ENST00000531110 PPP1R9AQ9ULJ8 1098 aa8□□□□□ -1.13
CD44-231ENST00000531110 AP4E1Q9UPM8 1137 aa8□□□□□ -1.13
CD44-231ENST00000531110 SNCAIPQ9Y6H5 919 aa8□□□□□ -1.13
CD44-231ENST00000531110 TFE3P19532 575 aaPredicted RBP7.99□□□□□ -1.13
CD44-231ENST00000531110 USP11P51784 963 aa7.99□□□□□ -1.13
CD44-231ENST00000531110 FANCCQ00597 558 aa7.99□□□□□ -1.13
CD44-231ENST00000531110 TSNAXIP1Q2TAA8 658 aa7.99□□□□□ -1.13
CD44-231ENST00000531110 PKNOX2Q96KN3 472 aa7.99□□□□□ -1.13
CD44-231ENST00000531110 FANCD2OSQ96PS1 177 aa7.99□□□□□ -1.13
CD44-231ENST00000531110 ACSS3Q9H6R3 686 aa7.99□□□□□ -1.13
CD44-231ENST00000531110 MAP4P27816 1152 aaKnown RBP7.98□□□□□ -1.13
CD44-231ENST00000531110 ASPAP45381 313 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 MAP7Q14244 749 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 DYMQ7RTS9 669 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 RNF214Q8ND24 703 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 DISC1Q9NRI5 854 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 FAM105AQ9NUU6 356 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 STOML1Q9UBI4 398 aa7.98□□□□□ -1.13
CD44-231ENST00000531110 FANCGO15287 622 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 MAP3K11Q16584 847 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 SGO2Q562F6 1265 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 BEND4Q6ZU67 534 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 HDXQ7Z353 690 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 RNF34Q969K3 372 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 GGT7Q9UJ14 662 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 PCDHA4Q9UN74 947 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 ROBO2Q9HCK4 1378 aa7.97□□□□□ -1.13
CD44-231ENST00000531110 K7ELQ4 463 aaPredicted RBP7.96□□□□□ -1.14
CD44-231ENST00000531110 GBP2P32456 591 aaPredicted RBP7.96□□□□□ -1.14
CD44-231ENST00000531110 CAMK2GQ13555 558 aaPredicted RBP7.96□□□□□ -1.14
CD44-231ENST00000531110 CDPF1Q6NVV7 123 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 MPRIPQ6WCQ1 1025 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 CYFIP1Q7L576 1253 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 GATAD2BQ8WXI9 593 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 C7orf69Q9H7B7 122 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 PIDD1Q9HB75 910 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 KBTBD4Q9NVX7 518 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 TLR6Q9Y2C9 796 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 PCDHB5Q9Y5E4 795 aa7.96□□□□□ -1.14
CD44-231ENST00000531110 FAM95CA0A1B0GW59 222 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 FURINP09958 794 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 RPL6Q02878 288 aaKnown RBP7.95□□□□□ -1.14
CD44-231ENST00000531110 PTPN11Q06124 597 aaPredicted RBP7.95□□□□□ -1.14
CD44-231ENST00000531110 CPSF6Q16630 551 aaKnown RBP eCLIP7.95□□□□□ -1.14
CD44-231ENST00000531110 RNF43Q68DV7 783 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 PAOXQ6QHF9 649 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 KCT2Q8NC54 265 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 LRRC3Q9BY71 257 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 SEMA6CQ9H3T2 930 aa7.95□□□□□ -1.14
CD44-231ENST00000531110 FAM221AA4D161 298 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 GFRA2O00451 464 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 CILPO75339 1184 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 PF4P02776 101 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 GARTP22102 1010 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 SEPT6Q14141 434 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 LRFN4Q6PJG9 635 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 FBLIM1Q8WUP2 373 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 ELMO3Q96BJ8 720 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 DBNDD2Q9BQY9 259 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 KCNF1Q9H3M0 494 aa7.94□□□□□ -1.14
CD44-231ENST00000531110 GREM1O60565 184 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 ADAM23O75077 832 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 FSTP19883 344 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 NTF4P34130 210 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 EIF4A3P38919 411 aaKnown RBP7.93□□□□□ -1.14
CD44-231ENST00000531110 NFIAQ12857 509 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 TTLL4Q14679 1199 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 ZBTB37Q5TC79 503 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 SEZ6L2Q6UXD5 910 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 METTL16Q86W50 562 aaKnown RBP7.93□□□□□ -1.14
CD44-231ENST00000531110 SMYD4Q8IYR2 804 aaPredicted RBP7.93□□□□□ -1.14
CD44-231ENST00000531110 PLPPR2Q96GM1 343 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 PCOLCE2Q9UKZ9 415 aa7.93□□□□□ -1.14
CD44-231ENST00000531110 SUPT16HQ9Y5B9 1047 aaKnown RBP7.93□□□□□ -1.14
CD44-231ENST00000531110 IGLV1-40P01703 118 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 RXRBP28702 533 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 CAP2P40123 477 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 MPP2Q14168 576 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 INPP5AQ14642 412 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 WIPI1Q5MNZ9 446 aaPredicted RBP7.92□□□□□ -1.14
CD44-231ENST00000531110 SNAP47Q5SQN1 464 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 FAM196AQ6ZSG2 479 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 SEMA6BQ9H3T3 888 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 COPRSQ9NQ92 184 aa7.92□□□□□ -1.14
CD44-231ENST00000531110 HMX2A2RU54 273 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 DCDC2CA8MYV0 355 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 BPNT1O95861 308 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 NEFMP07197 916 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 NFICP08651 508 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 RAB6AP20340 208 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.91□□□□□ -1.14
CD44-231ENST00000531110 USP48Q86UV5 1035 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 ZNF507Q8TCN5 953 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 ISL2Q96A47 359 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 WNT10AQ9GZT5 417 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 PRKAG2Q9UGJ0 569 aa7.91□□□□□ -1.14
CD44-231ENST00000531110 PRR36Q9H6K5 1346 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 F13A1P00488 732 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms