RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 MAP4K4O95819 1239 aaPredicted RBP16.3■□□□□ 0.2
VPS28-211ENST00000530790 CRHR2Q13324 411 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 PPIL2Q13356 520 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 AACSQ86V21 672 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 ZFPM1Q8IX07 1006 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 RPAP2Q8IXW5 612 aaPredicted RBP16.3■□□□□ 0.2
VPS28-211ENST00000530790 BRI3BPQ8WY22 251 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 EAF2Q96CJ1 260 aaPredicted RBP16.3■□□□□ 0.2
VPS28-211ENST00000530790 PTPN18Q99952 460 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 CCDC8Q9H0W5 538 aaPredicted RBP16.3■□□□□ 0.2
VPS28-211ENST00000530790 R3HDMLQ9H3Y0 253 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 DDX4Q9NQI0 724 aaKnown RBP16.3■□□□□ 0.2
VPS28-211ENST00000530790 ZBTB40Q9NUA8 1239 aa16.3■□□□□ 0.2
VPS28-211ENST00000530790 CETPP11597 493 aa16.29■□□□□ 0.2
VPS28-211ENST00000530790 RHBDL3P58872 404 aa16.29■□□□□ 0.2
VPS28-211ENST00000530790 PPATQ06203 517 aa16.29■□□□□ 0.2
VPS28-211ENST00000530790 SNAPC2Q13487 334 aa16.29■□□□□ 0.2
VPS28-211ENST00000530790 PKN2Q16513 984 aaKnown RBP16.29■□□□□ 0.2
VPS28-211ENST00000530790 NAA16Q6N069 864 aaPredicted RBP16.29■□□□□ 0.2
VPS28-211ENST00000530790 ZNF112Q9UJU3 913 aa16.29■□□□□ 0.2
VPS28-211ENST00000530790 IRF6O14896 467 aa16.28■□□□□ 0.2
VPS28-211ENST00000530790 IGSF3O75054 1194 aa16.28■□□□□ 0.2
VPS28-211ENST00000530790 CYP2E1P05181 493 aaPredicted RBP16.28■□□□□ 0.2
VPS28-211ENST00000530790 ZAP70P43403 619 aa16.28■□□□□ 0.2
VPS28-211ENST00000530790 PDE3AQ14432 1141 aa16.28■□□□□ 0.2
VPS28-211ENST00000530790 NOL9Q5SY16 702 aaKnown RBP16.28■□□□□ 0.2
VPS28-211ENST00000530790 COL2A1P02458 1487 aaPredicted RBP16.28■□□□□ 0.2
VPS28-211ENST00000530790 AK9Q5TCS8 1911 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 DDTLA6NHG4 134 aaPredicted RBP16.27■□□□□ 0.2
VPS28-211ENST00000530790 NPM3O75607 178 aaKnown RBP16.27■□□□□ 0.2
VPS28-211ENST00000530790 BAG3O95817 575 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 TAF1CQ15572 869 aaPredicted RBP16.27■□□□□ 0.2
VPS28-211ENST00000530790 SH3BP5LQ7L8J4 393 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 TEX11Q8IYF3 940 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 RHPN1Q8TCX5 695 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 KIF1BPQ96EK5 621 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 IL1RAPL2Q9NP60 686 aa16.27■□□□□ 0.2
VPS28-211ENST00000530790 APBB1O00213 710 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 PLCG2P16885 1265 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 C20orf194Q5TEA3 1177 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 SCYL3Q8IZE3 742 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 FAM43AQ8N2R8 423 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 ERO1AQ96HE7 468 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 OSBPL5Q9H0X9 879 aaPredicted RBP16.26■□□□□ 0.19
VPS28-211ENST00000530790 ZFYVE28Q9HCC9 887 aa16.26■□□□□ 0.19
VPS28-211ENST00000530790 PIH1D3Q9NQM4 214 aaKnown RBP16.26■□□□□ 0.19
VPS28-211ENST00000530790 AATFQ9NY61 560 aaKnown RBP eCLIP16.26■□□□□ 0.19
VPS28-211ENST00000530790 SIRT2Q8IXJ6 389 aa16.25■□□□□ 0.19
VPS28-211ENST00000530790 CLASRPQ8N2M8 674 aaKnown RBP16.25■□□□□ 0.19
VPS28-211ENST00000530790 SH3RF3Q8TEJ3 882 aaPredicted RBP16.25■□□□□ 0.19
VPS28-211ENST00000530790 ZCCHC17Q9NP64 241 aaKnown RBP16.25■□□□□ 0.19
VPS28-211ENST00000530790 PICK1Q9NRD5 415 aa16.25■□□□□ 0.19
VPS28-211ENST00000530790 PHF20L1A8MW92 1017 aa16.24■□□□□ 0.19
VPS28-211ENST00000530790 BTBD19C9JJ37 291 aa16.24■□□□□ 0.19
VPS28-211ENST00000530790 IDH1O75874 414 aaKnown RBP16.24■□□□□ 0.19
VPS28-211ENST00000530790 FBXO46Q6PJ61 603 aaPredicted RBP16.24■□□□□ 0.19
VPS28-211ENST00000530790 HPS5Q9UPZ3 1129 aa16.24■□□□□ 0.19
VPS28-211ENST00000530790 KCNH4Q9UQ05 1017 aa16.24■□□□□ 0.19
VPS28-211ENST00000530790 TRIM17Q9Y577 477 aa16.24■□□□□ 0.19
VPS28-211ENST00000530790 DOCK1Q14185 1865 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 RAB11FIP3O75154 756 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 IFIT2P09913 472 aaKnown RBP16.23■□□□□ 0.19
VPS28-211ENST00000530790 SP3Q02447 781 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 MAP3K10Q02779 954 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 ADGRA1Q86SQ6 560 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 CD99L2Q8TCZ2 262 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 NDUFB9Q9Y6M9 179 aa16.23■□□□□ 0.19
VPS28-211ENST00000530790 TBC1D12O60347 775 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 CTNND1O60716 968 aaKnown RBP16.22■□□□□ 0.19
VPS28-211ENST00000530790 CYP7A1P22680 504 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 PPP4CP60510 307 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 MAP3K12Q12852 859 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 ANKRD23Q86SG2 305 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 BCL11AQ9H165 835 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS28-211ENST00000530790 ZHX2Q9Y6X8 837 aa16.22■□□□□ 0.19
VPS28-211ENST00000530790 FLT1P17948 1338 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 FAM196BA6NMK8 535 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 CXCL11O14625 94 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 SLURP2P0DP57 97 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 PTPRAP18433 802 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 TTF1Q15361 905 aaPredicted RBP16.21■□□□□ 0.19
VPS28-211ENST00000530790 TMED8Q6PL24 325 aaPredicted RBP16.21■□□□□ 0.19
VPS28-211ENST00000530790 OTOP1Q7RTM1 612 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 CERS3Q8IU89 383 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 MAPKAPK5Q8IW41 473 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 MAGEB6Q8N7X4 407 aa16.21■□□□□ 0.19
VPS28-211ENST00000530790 DHX36Q9H2U1 1008 aaKnown RBP16.21■□□□□ 0.19
VPS28-211ENST00000530790 HERC5Q9UII4 1024 aaKnown RBP16.21■□□□□ 0.19
VPS28-211ENST00000530790 TLR2O60603 784 aa16.2■□□□□ 0.18
VPS28-211ENST00000530790 MIGA1Q8NAN2 632 aa16.2■□□□□ 0.18
VPS28-211ENST00000530790 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS28-211ENST00000530790 TGFBRAP1Q8WUH2 860 aa16.2■□□□□ 0.18
VPS28-211ENST00000530790 ANTXR1Q9H6X2 564 aa16.2■□□□□ 0.18
VPS28-211ENST00000530790 EFCC1Q9HA90 598 aa16.2■□□□□ 0.18
VPS28-211ENST00000530790 MYO5AQ9Y4I1 1855 aaKnown RBP16.19■□□□□ 0.18
VPS28-211ENST00000530790 PDHXO00330 501 aa16.19■□□□□ 0.18
VPS28-211ENST00000530790 SOX10P56693 466 aa16.19■□□□□ 0.18
VPS28-211ENST00000530790 DYNLL1P63167 89 aaKnown RBP16.19■□□□□ 0.18
VPS28-211ENST00000530790 ARHGEF6Q15052 776 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms