RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 C12orf40Q86WS4 652 aa9.59□□□□□ -0.87
PCF11-202ENST00000528336 FBLIM1Q8WUP2 373 aa9.59□□□□□ -0.87
PCF11-202ENST00000528336 GAL3ST3Q96A11 431 aa9.59□□□□□ -0.87
PCF11-202ENST00000528336 SYNGAP1Q96PV0 1343 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 RAB6AP20340 208 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 CDK8P49336 464 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 HDLBPQ00341 1268 aaKnown RBP9.58□□□□□ -0.88
PCF11-202ENST00000528336 LMNB2Q03252 620 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 INPP5AQ14642 412 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 SNAP47Q5SQN1 464 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 FAM20CQ8IXL6 584 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 ELMO3Q96BJ8 720 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 FANCD2OSQ96PS1 177 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 PICK1Q9NRD5 415 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 DISC1Q9NRI5 854 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 FAM105AQ9NUU6 356 aa9.58□□□□□ -0.88
PCF11-202ENST00000528336 FURINP09958 794 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 ZNF394Q53GI3 561 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 BNC2Q6ZN30 1099 aaPredicted RBP9.57□□□□□ -0.88
PCF11-202ENST00000528336 USP48Q86UV5 1035 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 TRIM42Q8IWZ5 723 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 RHOVQ96L33 236 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 ATXN3LQ9H3M9 355 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 PCDHGB7Q9Y5F8 929 aa9.57□□□□□ -0.88
PCF11-202ENST00000528336 RNGTTO60942 597 aaKnown RBP9.56□□□□□ -0.88
PCF11-202ENST00000528336 F13A1P00488 732 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 MAP4P27816 1152 aaKnown RBP9.56□□□□□ -0.88
PCF11-202ENST00000528336 EIF4A3P38919 411 aaKnown RBP9.56□□□□□ -0.88
PCF11-202ENST00000528336 PPM1JQ5JR12 505 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 LRFN4Q6PJG9 635 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 GOLM1Q8NBJ4 401 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 PLPPR2Q96GM1 343 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 PIDD1Q9HB75 910 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 LGR6Q9HBX8 967 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 STOML1Q9UBI4 398 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 RAXQ9Y2V3 346 aa9.56□□□□□ -0.88
PCF11-202ENST00000528336 HCLS1P14317 486 aaPredicted RBP9.55□□□□□ -0.88
PCF11-202ENST00000528336 TTLL4Q14679 1199 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 WIPI1Q5MNZ9 446 aaPredicted RBP9.55□□□□□ -0.88
PCF11-202ENST00000528336 PRR23CQ6ZRP0 262 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 BEND4Q6ZU67 534 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 HDXQ7Z353 690 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 METTL16Q86W50 562 aaKnown RBP9.55□□□□□ -0.88
PCF11-202ENST00000528336 NT5DC4Q86YG4 428 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 ADAMTS1Q9UHI8 967 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 HIF3AQ9Y2N7 669 aa9.55□□□□□ -0.88
PCF11-202ENST00000528336 NFICP08651 508 aa9.54□□□□□ -0.88
PCF11-202ENST00000528336 ERVK-24P63145 666 aa9.54□□□□□ -0.88
PCF11-202ENST00000528336 NFKBIBQ15653 356 aa9.54□□□□□ -0.88
PCF11-202ENST00000528336 RSPO4Q2I0M5 234 aaPredicted RBP9.54□□□□□ -0.88
PCF11-202ENST00000528336 NKAPLQ5M9Q1 402 aa9.54□□□□□ -0.88
PCF11-202ENST00000528336 DIEXFQ68CQ4 756 aaKnown RBP9.54□□□□□ -0.88
PCF11-202ENST00000528336 FBXL19Q6PCT2 694 aa9.54□□□□□ -0.88
PCF11-202ENST00000528336 CCDC84Q86UT8 332 aaPredicted RBP9.54□□□□□ -0.88
PCF11-202ENST00000528336 ZNF296Q8WUU4 475 aaPredicted RBP9.54□□□□□ -0.88
PCF11-202ENST00000528336 YIPF2Q9BWQ6 316 aa9.54□□□□□ -0.88
PCF11-202ENST00000528336 GSX1Q9H4S2 264 aaPredicted RBP9.54□□□□□ -0.88
PCF11-202ENST00000528336 SSU72Q9NP77 194 aaKnown RBP9.54□□□□□ -0.88
PCF11-202ENST00000528336 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.53□□□□□ -0.88
PCF11-202ENST00000528336 FAM95CA0A1B0GW59 222 aa9.53□□□□□ -0.88
PCF11-202ENST00000528336 HMX2A2RU54 273 aa9.53□□□□□ -0.88
PCF11-202ENST00000528336 PRAMEF27A3QJZ7 478 aa9.53□□□□□ -0.88
PCF11-202ENST00000528336 TCF3P15923 654 aa9.53□□□□□ -0.88
PCF11-202ENST00000528336 CLEC10AQ8IUN9 316 aa9.53□□□□□ -0.88
PCF11-202ENST00000528336 DAGLAQ9Y4D2 1042 aa9.53□□□□□ -0.88
PCF11-202ENST00000528336 TLR3O15455 904 aaKnown RBP9.52□□□□□ -0.89
PCF11-202ENST00000528336 BPNT1O95861 308 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 GARTP22102 1010 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 RACK1P63244 317 aaKnown RBP9.52□□□□□ -0.89
PCF11-202ENST00000528336 RNF214Q8ND24 703 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 FBXO27Q8NI29 283 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 GATAD2BQ8WXI9 593 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 FAM83CQ9BQN1 747 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 ACSS3Q9H6R3 686 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 C7orf69Q9H7B7 122 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 DDX41Q9UJV9 622 aaKnown RBP9.52□□□□□ -0.89
PCF11-202ENST00000528336 SUPT16HQ9Y5B9 1047 aaKnown RBP9.52□□□□□ -0.89
PCF11-202ENST00000528336 SNCAIPQ9Y6H5 919 aa9.52□□□□□ -0.89
PCF11-202ENST00000528336 FAM221AA4D161 298 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 NEFMP07197 916 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 H2AFB1P0C5Y9 115 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 H2AFB2P0C5Z0 115 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 RPL6Q02878 288 aaKnown RBP9.51□□□□□ -0.89
PCF11-202ENST00000528336 CYFIP1Q7L576 1253 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 SMYD4Q8IYR2 804 aaPredicted RBP9.51□□□□□ -0.89
PCF11-202ENST00000528336 SPON2Q9BUD6 331 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 SEMA6CQ9H3T2 930 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 SEMA6BQ9H3T3 888 aa9.51□□□□□ -0.89
PCF11-202ENST00000528336 GFRA2O00451 464 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 DYRK3O43781 588 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 CILPO75339 1184 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 RING1Q06587 406 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 ZBTB37Q5TC79 503 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 PAOXQ6QHF9 649 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 FAM196AQ6ZSG2 479 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 KIAA0825Q8IV33 1275 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 ZNF654Q8IZM8 581 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 ISL2Q96A47 359 aa9.5□□□□□ -0.89
PCF11-202ENST00000528336 GREM1O60565 184 aa9.49□□□□□ -0.89
PCF11-202ENST00000528336 RANGAP1P46060 587 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms