RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ARHGAP27Q6ZUM4 889 aa22.28■■□□□ 1.16
VPS28-207ENST00000526977 NECAB1Q8N987 351 aa22.28■■□□□ 1.16
VPS28-207ENST00000526977 MYH2Q9UKX2 1941 aa22.28■■□□□ 1.16
VPS28-207ENST00000526977 HMGB1P09429 215 aaKnown RBP22.28■■□□□ 1.16
VPS28-207ENST00000526977 RASSF7Q02833 373 aa22.28■■□□□ 1.16
VPS28-207ENST00000526977 SERPINA10Q9UK55 444 aa22.28■■□□□ 1.16
VPS28-207ENST00000526977 SCNN1DP51172 638 aa22.27■■□□□ 1.16
VPS28-207ENST00000526977 CXCL9Q07325 125 aa22.27■■□□□ 1.16
VPS28-207ENST00000526977 TNIP1Q15025 636 aa22.27■■□□□ 1.16
VPS28-207ENST00000526977 AGBL3Q8NEM8 1001 aa22.27■■□□□ 1.16
VPS28-207ENST00000526977 SH3RF3Q8TEJ3 882 aaPredicted RBP22.27■■□□□ 1.16
VPS28-207ENST00000526977 E7EWF7 191 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 CRKP46108 304 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 CIAPIN1Q6FI81 312 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 CHAMP1Q96JM3 812 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 ZDHHC15Q96MV8 337 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 DCP1AQ9NPI6 582 aaPredicted RBP22.26■■□□□ 1.15
VPS28-207ENST00000526977 LMBRD1Q9NUN5 540 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 WDR33Q9C0J8 1336 aaKnown RBP22.26■■□□□ 1.15
VPS28-207ENST00000526977 USP5P45974 858 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 HAND2P61296 217 aa22.26■■□□□ 1.15
VPS28-207ENST00000526977 RHBDL3P58872 404 aa22.25■■□□□ 1.15
VPS28-207ENST00000526977 Q6ZUG5 572 aa22.25■■□□□ 1.15
VPS28-207ENST00000526977 DHX32Q7L7V1 743 aaKnown RBP22.25■■□□□ 1.15
VPS28-207ENST00000526977 GMLQ99445 158 aa22.25■■□□□ 1.15
VPS28-207ENST00000526977 PSME4Q14997 1843 aa22.25■■□□□ 1.15
VPS28-207ENST00000526977 SYT1P21579 422 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 GJB2P29033 226 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 HDAC9Q9UKV0 1011 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 ZNF646O15015 1829 aaPredicted RBP22.24■■□□□ 1.15
VPS28-207ENST00000526977 FZD9O00144 591 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 LMNB1P20700 586 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 MMP14P50281 582 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 EXOSC10Q01780 885 aaKnown RBP22.24■■□□□ 1.15
VPS28-207ENST00000526977 TEX11Q8IYF3 940 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 OGFOD1Q8N543 542 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 MKRN1Q9UHC7 482 aaKnown RBP22.24■■□□□ 1.15
VPS28-207ENST00000526977 ANAPC4Q9UJX5 808 aa22.24■■□□□ 1.15
VPS28-207ENST00000526977 DTNBO60941 627 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 EIF6P56537 245 aaKnown RBP22.23■■□□□ 1.15
VPS28-207ENST00000526977 TRDNQ13061 729 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 APOBEC3HQ6NTF7 200 aaKnown RBP22.23■■□□□ 1.15
VPS28-207ENST00000526977 TGFBRAP1Q8WUH2 860 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 ARPP21Q9UBL0 812 aaPredicted RBP22.23■■□□□ 1.15
VPS28-207ENST00000526977 STX6O43752 255 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 PRELPP51888 382 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 RBM5P52756 815 aaKnown RBP eCLIP22.23■■□□□ 1.15
VPS28-207ENST00000526977 PPARAQ07869 468 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 SBK1Q52WX2 424 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 CTR9Q6PD62 1173 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 NCOA7Q8NI08 942 aa22.23■■□□□ 1.15
VPS28-207ENST00000526977 PRPF40AO75400 957 aaKnown RBP22.22■■□□□ 1.15
VPS28-207ENST00000526977 USP40Q9NVE5 1235 aa22.22■■□□□ 1.15
VPS28-207ENST00000526977 MINDY4BA8MYZ0 360 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 USP17L12C9JPN9 530 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 USP17L21D6R901 530 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 AMOTL1Q8IY63 956 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 LRRC2Q9BYS8 371 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 NBPF3Q9H094 633 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 RNF41Q9H4P4 317 aaPredicted RBP22.21■■□□□ 1.15
VPS28-207ENST00000526977 MCM9Q9NXL9 1143 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 USP17L8P0C7I0 530 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 ZSCAN22P10073 491 aaPredicted RBP22.21■■□□□ 1.15
VPS28-207ENST00000526977 RPS12P25398 132 aaKnown RBP22.21■■□□□ 1.15
VPS28-207ENST00000526977 KLHL40Q2TBA0 621 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 AKNAD1Q5T1N1 836 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 CNNM2Q9H8M5 875 aa22.21■■□□□ 1.15
VPS28-207ENST00000526977 ZBTB12Q9Y330 459 aaPredicted RBP22.21■■□□□ 1.15
VPS28-207ENST00000526977 DDX49Q9Y6V7 483 aaKnown RBP22.21■■□□□ 1.15
VPS28-207ENST00000526977 PCP11498 1178 aaKnown RBP22.2■■□□□ 1.14
VPS28-207ENST00000526977 YBX3P16989 372 aaKnown RBP eCLIP22.2■■□□□ 1.141e-7■□□□□ 9.8
VPS28-207ENST00000526977 CDC42EP5Q6NZY7 148 aa22.2■■□□□ 1.14
VPS28-207ENST00000526977 MFSD6Q6ZSS7 791 aa22.2■■□□□ 1.14
VPS28-207ENST00000526977 RALYLQ86SE5 291 aaKnown RBP22.2■■□□□ 1.14
VPS28-207ENST00000526977 STAG1Q8WVM7 1258 aa22.2■■□□□ 1.14
VPS28-207ENST00000526977 STK3Q13188 491 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 TBC1D10CQ8IV04 446 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 BRF1Q92994 677 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 AGXT2Q9BYV1 514 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 SLC3A2P08195 630 aaKnown RBP22.19■■□□□ 1.14
VPS28-207ENST00000526977 CTDSPL2Q05D32 466 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 CFAP100Q494V2 611 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 MAPKAPK5Q8IW41 473 aa22.19■■□□□ 1.14
VPS28-207ENST00000526977 KRT23Q9C075 422 aa22.18■■□□□ 1.14
VPS28-207ENST00000526977 MCM5P33992 734 aa22.18■■□□□ 1.14
VPS28-207ENST00000526977 FGD1P98174 961 aa22.18■■□□□ 1.14
VPS28-207ENST00000526977 C12orf60Q5U649 245 aa22.18■■□□□ 1.14
VPS28-207ENST00000526977 FLT1P17948 1338 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 LAMA4Q16363 1823 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 WDHD1O75717 1129 aaPredicted RBP22.17■■□□□ 1.14
VPS28-207ENST00000526977 DLGAP5Q15398 846 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 MTMR14Q8NCE2 650 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 DPF2Q92785 391 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 GTF3C6Q969F1 213 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 MTMR6Q9Y217 621 aa22.17■■□□□ 1.14
VPS28-207ENST00000526977 SRCAPQ6ZRS2 3230 aa22.16■■□□□ 1.14
VPS28-207ENST00000526977 POLR3DP05423 398 aaPredicted RBP22.16■■□□□ 1.14
VPS28-207ENST00000526977 FOXD4L6Q3SYB3 417 aaPredicted RBP22.16■■□□□ 1.14
VPS28-207ENST00000526977 FOXD4L3Q6VB84 417 aaPredicted RBP22.16■■□□□ 1.14
VPS28-207ENST00000526977 MB21D2Q8IYB1 491 aaPredicted RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms